CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92072
KRG97648
KRH04949
KRH29099
KRH31223
KRH32028
KRH52604
KRH53996
KRH61944
KRH63943
KRH71411

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	KRH04949	AT2G24550.1	21798944
AT5G51110.1	KRH52604	AT2G24550.1	21798944
AT5G51110.1	KRH61944	AT2G24550.1	21798944
AT5G51110.1	KRG92072	AT2G47450.1	21798944
AT5G51110.1	KRH29099	AT2G47450.1	21798944
AT5G51110.1	KRG97648	AT3G10970.1	21798944
AT5G51110.1	KRH31223	AT3G10970.1	21798944
AT5G51110.1	KRH32028	AT4G02720.1	21798944
AT5G51110.1	KRH71411	AT4G02720.1	21798944
AT5G51110.1	KRH53996	AT5G08650.1	21798944
AT5G51110.1	KRH63943	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70391	Soybean	plastid	84.26	84.65
VIT_16s0013g00240.t01	Wine grape	plastid	61.57	63.33
AT5G51110.1	Thale cress	plastid	56.94	55.91
CDY32642	Canola	plastid	55.56	55.81
GSMUA_Achr2P18260_001	Banana	plastid	55.09	54.84
Bra029188.1-P	Field mustard	plastid	54.17	54.42
CDY38850	Canola	plastid	54.17	54.42
CDX71689	Canola	cytosol	23.15	48.54
PGSC0003DMT400013443	Potato	plastid	46.76	47.87
TraesCS5A01G545700.1	Wheat	plastid	45.37	46.67
TraesCS4B01G379500.1	Wheat	plastid	46.3	45.87
Os03t0100200-01	Rice	plastid	41.67	44.34
TraesCSU01G129700.1	Wheat	plastid	43.98	44.19
Zm00001d034715_P001	Maize	plastid	44.44	44.04
EER93165	Sorghum	plastid	41.2	41.78
KRH21339	Soybean	cytosol	20.83	33.83
KRH42974	Soybean	cytosol	19.91	32.58
KRH10960	Soybean	mitochondrion	22.69	27.22
HORVU4Hr1G090300.6	Barley	plastid	20.83	17.58

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	EntrezGene:100813755	Gene3D:3.30.1360.20	UniProt:A0A0R0HS87	EMBL:ACUP02006473
EnsemblPlantsGene:GLYMA_10G117200	GO:GO:0003674	GO:GO:0003824	GO:GO:0006729	GO:GO:0008124	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR036428	EnsemblPlants:KRH33344	ProteinID:KRH33344
ProteinID:KRH33344.1	InterPro:PCD_sf	PFAM:PF01329	PANTHER:PTHR12599	PANTHER:PTHR12599:SF8	MetaCyc:PWY-7158
InterPro:Pterin_deHydtase	SUPFAM:SSF55248	UniParc:UPI000233C347	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:29476408..29480233

Molecular Weight (calculated)

23923.0 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.020

Length

216 amino acids

Sequence
(BLAST)

001: MAITGNLNFN LNLVLPVARH MACPPRVPSF LFTRGRGAWS PSLLVTRAID ANEFLGDFGA RDPFPAELES SFGEKVLGYG NTEHKILIPT ITALGLSQQE
101: CAPVSSAQPP ISLDDAQTLI RKVVGWRLVN EENGLKIQCL WKLRDFKCGV ELINRISKVV EAEGHFPNIY LEQPNQVRAE LWTASIGGLS MNDFIVAAKI
201: DQIKTSDLVP RKRVWA

Best Arabidopsis Sequence Match ( AT5G51110.1 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.