Factsheet for PGSC0003DMT400013443

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003274
PGSC0003DMT400070154
PGSC0003DMT400086234
PGSC0003DMT400097185

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	PGSC0003DMT400086234	AT2G24550.1	21798944
AT5G51110.1	PGSC0003DMT400003274	AT2G47450.1	21798944
AT5G51110.1	PGSC0003DMT400097185	AT4G02720.1	21798944
AT5G51110.1	PGSC0003DMT400070154	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g00240.t01	Wine grape	plastid	49.76	50.0
KRH70391	Soybean	plastid	48.34	47.44
KRH33344	Soybean	plastid	47.87	46.76
CDY32642	Canola	plastid	42.65	41.86
CDX71689	Canola	cytosol	20.38	41.75
Bra029188.1-P	Field mustard	plastid	41.71	40.93
CDY38850	Canola	plastid	41.71	40.93
Zm00001d034715_P001	Maize	plastid	41.71	40.37
GSMUA_Achr2P18260_001	Banana	plastid	41.23	40.09
AT5G51110.1	Thale cress	plastid	41.71	40.0
TraesCSU01G129700.1	Wheat	plastid	38.86	38.14
TraesCS4B01G379500.1	Wheat	plastid	39.34	38.07
EER93165	Sorghum	plastid	38.39	38.03
TraesCS5A01G545700.1	Wheat	plastid	37.44	37.62
Os03t0100200-01	Rice	plastid	35.55	36.95
HORVU4Hr1G090300.6	Barley	plastid	19.91	16.41

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	EntrezGene:102595361	Gene3D:3.30.1360.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006729
GO:GO:0006950	GO:GO:0008124	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0071944	InterPro:IPR036428	UniProt:M1A2V3	InterPro:PCD_sf	PFAM:PF01329	EnsemblPlantsGene:PGSC0003DMG400005246
PGSC:PGSC0003DMG400005246	EnsemblPlants:PGSC0003DMT400013443	PANTHER:PTHR12599	PANTHER:PTHR12599:SF8	InterPro:Pterin_deHydtase	SUPFAM:SSF55248
UniParc:UPI000296A20F	SEG:seg	:	:	:	:

Description

Pterin-4-alpha-carbinolamine dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400005246]

Coordinates

chr3:-:36666410..36668792

Molecular Weight (calculated)

23129.8 Da

IEP (calculated)

6.339

GRAVY (calculated)

0.011

Length

211 amino acids

Sequence
(BLAST)

001: MAAATYLCFS PPISVSSLPS RKPNFVTPNL QTSQSRICTR IRCNTDLLGD FGARDPFPAE VESKFGDKVL GFSDTEHKIL IPAASALSLA NQECTDISPN
101: QTPLSEFEAK QLLFKVVGWR LANEDGVLKL QCTWKLKDFD CGVELINRIG KVVEGTGHLP TLHQLEQSNQ VHAELWTPSI GEYNSSVAPL LPHPSLVVIS
201: SVVCKFICSV F

Best Arabidopsis Sequence Match ( AT5G51110.1 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKVF GLLPPVSRNN RKLGRLTVTR SNLAQDFLGD FGARDPYPEE IASQFGDKVL GCQSTEHKIL IPNASVLSLS
101: QLQCSPVSSS QPPLSGDDAR TLLHKVLGWS IVDNEAGGLK IRCMWKVRDF GCGVELINRI HKVAEASGHY PSLHLESPTQ VRAELFTSSI GGLSMNDFIM
201: AAKIDDIKTS DLSPRKRAWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.