Factsheet for Zm00001d034715_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006059_P001
Zm00001d014648_P001
Zm00001d020706_P001
Zm00001d021006_P001
Zm00001d027518_P001
Zm00001d031545_P001
Zm00001d036499_P001
Zm00001d037512_P001
Zm00001d049768_P001
Zm00001d053861_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51110.1	Zm00001d006059_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d014648_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d021006_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d031545_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d036499_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d049768_P001	AT2G24550.1	21798944
AT5G51110.1	Zm00001d027518_P001	AT2G47450.1	21798944
AT5G51110.1	Zm00001d037512_P001	AT3G10970.1	21798944
AT5G51110.1	Zm00001d020706_P001	AT4G02720.1	21798944
AT5G51110.1	Zm00001d053861_P005	AT5G08650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93165	Sorghum	plastid	84.86	86.85
Os03t0100200-01	Rice	plastid	61.93	66.5
TraesCS5A01G545700.1	Wheat	plastid	57.34	59.52
TraesCSU01G129700.1	Wheat	plastid	56.42	57.21
TraesCS4B01G379500.1	Wheat	plastid	55.96	55.96
VIT_16s0013g00240.t01	Wine grape	plastid	49.08	50.95
GSMUA_Achr2P18260_001	Banana	plastid	50.0	50.23
KRH70391	Soybean	plastid	44.95	45.58
Bra029188.1-P	Field mustard	plastid	44.5	45.12
CDY38850	Canola	plastid	44.5	45.12
KRH33344	Soybean	plastid	44.04	44.44
CDY32642	Canola	plastid	43.12	43.72
AT5G51110.1	Thale cress	plastid	42.66	42.27
PGSC0003DMT400013443	Potato	plastid	40.37	41.71
CDX71689	Canola	cytosol	17.89	37.86
HORVU4Hr1G090300.6	Barley	plastid	29.82	25.39
Zm00001d043963_P001	Maize	mitochondrion	21.1	24.21

Protein Annotations

KEGG:00790+4.2.1.96	MapMan:1.2.1.2.6	EntrezGene:100277322	Gene3D:3.30.1360.20	UniProt:B6TSX9	EMBL:BT070106
EMBL:EU968094	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006729	GO:GO:0006950	GO:GO:0008124	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0071944
GO:GO:0110102	InterPro:IPR036428	ProteinID:ONM11061.1	InterPro:PCD_sf	PFAM:PF01329	PANTHER:PTHR12599
PANTHER:PTHR12599:SF8	InterPro:Pterin_deHydtase	SUPFAM:SSF55248	UniParc:UPI000182E0E8	EnsemblPlantsGene:Zm00001d034715	EnsemblPlants:Zm00001d034715_P001
EnsemblPlants:Zm00001d034715_T001	SEG:seg	:	:	:	:

Description

rubisco accumulation factor2 rubisco accumulation factor2

Coordinates

chr1:+:300526733..300527389

Molecular Weight (calculated)

23137.8 Da

IEP (calculated)

6.761

GRAVY (calculated)

0.036

Length

218 amino acids

Sequence
(BLAST)

001: MALRLSLAPP AAAPAASTCR CSSASFIRPG VAVGSRRGRA RGCVVAMADL LGDLGARDPF PEEIESQFGE KVLGNVDTLH QILIPTLSAL SLASLPLQPD
101: AEPLSLDDAR RLLFKVVGWR LVLSDGDGDE QRPARLQCVW KVRDETCGQE LIARINAALH GAGHAPATLA FEAPNQVTAE LSTPSAAGDS LTVNDYIVAA
201: RIDKVKTLDL IPKKRAWA

Best Arabidopsis Sequence Match ( AT5G51110.2 )
(BLAST)

001: MAATSSSPPC NISASSLLLR QPSRSILKDF LGDFGARDPY PEEIASQFGD KVLGCQSTEH KILIPNASVL SLSQLQCSPV SSSQPPLSGD DARTLLHKVL
101: GWSIVDNEAG GLKIRCMWKV RDFGCGVELI NRIHKVAEAS GHYPSLHLES PTQVRAELFT SSIGGLSMND FIMAAKIDDI KTSDLSPRKR AWA

Arabidopsis Description

ATP1Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU63]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.