Factsheet for Bra013603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007437.1-P
Bra007641.1-P
Bra011335.1-P
Bra012095.1-P
Bra014547.1-P
Bra023956.1-P
Bra029577.1-P
Bra032668.1-P
Bra033217.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22250.1	Bra032668.1-P	AT1G02140.1	21798944
AT4G22250.1	Bra033217.1-P	AT1G02140.1	21798944
AT4G22250.1	Bra007437.1-P	AT3G59220.1	21798944
AT4G22250.1	Bra014547.1-P	AT3G59220.1	21798944
AT4G22250.1	Bra007641.1-P	AT3G61920.1	21798944
AT4G22250.1	Bra029577.1-P	AT4G05420.1	21798944
AT4G22250.1	Bra011335.1-P	AT4G32295.1	21798944
AT4G22250.1	Bra023956.1-P	AT4G32295.1	21798944
AT4G22250.1	Bra012095.1-P	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82926	Canola	nucleus	70.94	71.64
CDX79140	Canola	cytosol	65.02	63.46
AT4G22250.1	Thale cress	cytosol	55.66	52.8
Bra019391.1-P	Field mustard	nucleus	49.75	51.27
Bra000784.1-P	Field mustard	nucleus	42.36	42.57
Solyc02g081180.1.1	Tomato	nucleus	30.05	30.05
PGSC0003DMT400043086	Potato	nucleus	30.05	29.33
GSMUA_Achr1P18240_001	Banana	nucleus	23.65	27.27
GSMUA_Achr3P12970_001	Banana	cytosol	22.66	26.59
Bra034501.1-P	Field mustard	cytosol	26.11	25.12
Solyc03g031830.1.1	Tomato	nucleus	29.06	24.08
PGSC0003DMT400061842	Potato	mitochondrion	28.57	24.07
Bra015092.1-P	Field mustard	nucleus	12.32	12.08
Bra029623.1-P	Field mustard	nucleus	7.39	7.01
Bra040362.1-P	Field mustard	nucleus	11.82	6.94
Bra001236.1-P	Field mustard	nucleus	6.4	5.88

Protein Annotations

EnsemblPlants:Bra013603.1	EnsemblPlants:Bra013603.1-P	EnsemblPlantsGene:Bra013603	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	SEG:seg	UniParc:UPI0002545557	UniProt:M4DAU3	MapMan:35.2

Description

AT4G22250 (E=3e-057) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:6590885..6591496

Molecular Weight (calculated)

22418.4 Da

IEP (calculated)

6.270

GRAVY (calculated)

-0.547

Length

203 amino acids

Sequence
(BLAST)

001: MSDFDLGTTQ RMTTETHRTT TCLDLLRRQM SIADRTRRKR TLRERLRFKC IACCGPTINN TTTSATLHSP TSREDEIEEQ SEIQFVPGSD AGSGSGMNLA
101: TALEAERYNR GEPAVDMTPR RVSLMRLLDE TAERVDNDGR ETEISTASME TLTGNDSVCC VCMGRKKGAA FIPCGHTFAE FAPESCGSTE ARVLFATVRS
201: SRS

Best Arabidopsis Sequence Match ( AT4G22250.1 )
(BLAST)

001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.