Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 2
- plastid 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018049.1-P | |
| Bra018126.1-P | |
| Bra029904.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61920.1 | Bra018126.1-P | AT3G47620.1 | 21798944 |
| AT3G61920.1 | Bra018049.1-P | AT3G48550.1 | 21798944 |
| AT3G61920.1 | Bra029904.1-P | AT3G48550.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11383 | Canola | cytosol | 85.64 | 98.77 |
| AT3G61920.1 | Thale cress | cytosol | 78.19 | 78.61 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 46.28 | 45.55 |
| KRH47813 | Soybean | nucleus | 44.15 | 42.13 |
| KRH06376 | Soybean | nucleus | 43.62 | 41.21 |
| KRH68957 | Soybean | nucleus | 42.55 | 39.22 |
| Solyc10g005020.2.1 | Tomato | nucleus | 43.62 | 39.05 |
| KRG97236 | Soybean | cytosol | 44.15 | 38.78 |
| PGSC0003DMT400029320 | Potato | cytosol | 43.62 | 38.32 |
| Bra022910.1-P | Field mustard | cytosol | 16.49 | 32.29 |
Protein Annotations
| EnsemblPlants:Bra007641.1 | EnsemblPlants:Bra007641.1-P | EnsemblPlantsGene:Bra007641 | InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI0002542A47 | UniProt:M4CTU7 | MapMan:35.2 | : |
Description
AT3G61920 (E=2e-080) | unknown protein
Coordinates
chrA09:-:30241166..30241732
Molecular Weight (calculated)
20170.9 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.215
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVCKGSG GSRKLYDKDD LLIRVVTPNG GVMELHPPIF ADFITNEFPG HVIHDTLSIR HSSPPLLHGE ELFPGNIYYL LPFSSSTTST AQQHYTDQLA
101: TPYRMSFGKT PVKSAASGGG GGSSGVWKVR LVISPEQLAE ILAEDVETEA FVESVRTVAK CAGQGGGANW RANSDQLSIT SSFKGQLR
101: TPYRMSFGKT PVKSAASGGG GGSSGVWKVR LVISPEQLAE ILAEDVETEA FVESVRTVAK CAGQGGGANW RANSDQLSIT SSFKGQLR
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.