Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 | |
| PGSC0003DMT400046599 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61920.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | PGSC0003DMT400046599 | AT3G48550.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005020.2.1 | Tomato | nucleus | 83.18 | 84.76 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 55.14 | 61.78 |
| KRH47813 | Soybean | nucleus | 50.47 | 54.82 |
| KRH06376 | Soybean | nucleus | 50.0 | 53.77 |
| CDY11383 | Canola | cytosol | 35.51 | 46.63 |
| AT3G61920.1 | Thale cress | cytosol | 40.65 | 46.52 |
| KRG97236 | Soybean | cytosol | 45.79 | 45.79 |
| KRH68957 | Soybean | nucleus | 42.99 | 45.1 |
| CDY62168 | Canola | cytosol | 39.25 | 44.92 |
| Bra007641.1-P | Field mustard | cytosol | 38.32 | 43.62 |
| PGSC0003DMT400031886 | Potato | cytosol | 36.92 | 41.58 |
| PGSC0003DMT400014973 | Potato | nucleus | 27.57 | 29.35 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029320 | EnsemblPlantsGene:PGSC0003DMG400011267 | EntrezGene:102603527 | InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 |
| PFAM:PF14009 | PGSC:PGSC0003DMG400011267 | RefSeq:XP_006352629.1 | SEG:seg | UniParc:UPI000294EBA4 | UniProt:M1ASL2 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011267]
Coordinates
chr10:-:108453..110298
Molecular Weight (calculated)
23896.2 Da
IEP (calculated)
6.168
GRAVY (calculated)
-0.486
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVFKGFG FGEVDVEEEE NNKMLIKVVT CNGGIMELHA PITAHCITNE FPGHAIYHSH DMFSPPLFPN EELHAGESYH LLPLLNHPII KSKRGQKEEK
101: CDVDDVTTCD SSRSNLPQPT PYRMSFDNQR MLKRSEAEVF PTYNSTGVWK VKLLISPEQL SEILSHEART EALIESVRTV AKCGSGASSM ATAHSDKWSY
201: SNTNNNNWKA ATPI
101: CDVDDVTTCD SSRSNLPQPT PYRMSFDNQR MLKRSEAEVF PTYNSTGVWK VKLLISPEQL SEILSHEART EALIESVRTV AKCGSGASSM ATAHSDKWSY
201: SNTNNNNWKA ATPI
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.