CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH03966
KRH54542
KRH56919
KRH57236
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61920.1	KRH03466	AT3G47620.1	21798944
AT3G61920.1	KRH54542	AT3G47620.1	21798944
AT3G61920.1	KRH56919	AT3G47620.1	21798944
AT3G61920.1	KRH63357	AT3G47620.1	21798944
AT3G61920.1	KRH03966	AT3G48550.1	21798944
AT3G61920.1	KRH57236	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47813	Soybean	nucleus	91.96	92.89
VIT_15s0048g02650.t01	Wine grape	cytosol	58.79	61.26
KRH68957	Soybean	nucleus	56.78	55.39
KRG97236	Soybean	cytosol	57.29	53.27
Solyc10g005020.2.1	Tomato	nucleus	55.78	52.86
PGSC0003DMT400029320	Potato	cytosol	53.77	50.0
AT3G61920.1	Thale cress	cytosol	43.72	46.52
CDY11383	Canola	cytosol	36.68	44.79
CDY62168	Canola	cytosol	41.71	44.38
Bra007641.1-P	Field mustard	cytosol	41.21	43.62
KRG91592	Soybean	cytosol	44.22	37.45
KRH38354	Soybean	cytosol	44.72	36.18
KRH08843	Soybean	cytosol	44.22	36.07
KRH35232	Soybean	cytosol	44.72	36.03
KRH60065	Soybean	cytosol	30.15	28.04
KRH41344	Soybean	cytosol	29.15	27.75

Protein Annotations

EMBL:ACUP02009827	EnsemblPlants:KRH06376	EnsemblPlantsGene:GLYMA_16G018800	EntrezGene:100778399	InterPro:DUF4228_plant	PANTHER:PTHR33148
PANTHER:PTHR33148:SF9	PFAM:PF14009	ProteinID:KRH06376	ProteinID:KRH06376.1	SEG:seg	UniParc:UPI00023D74C3
UniProt:I1MKD1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1663027..1664207

Molecular Weight (calculated)

22040.0 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.461

Length

199 amino acids

Sequence
(BLAST)

001: MGNCVFRGLN HGVSEDMMVK VVTSNGGIME LFSPITVECI TNEFPGQGIF RSRRDMFSEP LPKNEELHGG EVYYLLPLNP SSSRKSLTRQ FSDTAATLTP
101: YRMSTFEKNN NNNNNNVYSE PPELISRYNS SGVWKVKLVI SPEKLSEILS QESRTEALIE SVRTVAKCGN GAPSSVANSD QWSVASSWKG SMSEKMGLQ

Best Arabidopsis Sequence Match ( AT3G61920.1 )
(BLAST)

001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW

Arabidopsis Description

At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.