Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g01360.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61920.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | VIT_17s0000g01360.t01 | AT3G48550.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47813 | Soybean | nucleus | 62.3 | 60.41 |
| VIT_02s0025g02720.t01 | Wine grape | cytosol | 60.73 | 59.18 |
| KRH06376 | Soybean | nucleus | 61.26 | 58.79 |
| Solyc10g005020.2.1 | Tomato | nucleus | 64.4 | 58.57 |
| PGSC0003DMT400029320 | Potato | cytosol | 61.78 | 55.14 |
| AT3G61920.1 | Thale cress | cytosol | 50.79 | 51.87 |
| KRH68957 | Soybean | nucleus | 54.97 | 51.47 |
| KRG97236 | Soybean | cytosol | 57.59 | 51.4 |
| CDY11383 | Canola | cytosol | 41.36 | 48.47 |
| CDY62168 | Canola | cytosol | 46.07 | 47.06 |
| Bra007641.1-P | Field mustard | cytosol | 45.55 | 46.28 |
Protein Annotations
| ArrayExpress:VIT_15s0048g02650 | EMBL:FN596739 | EnsemblPlants:VIT_15s0048g02650.t01 | EnsemblPlantsGene:VIT_15s0048g02650 | EntrezGene:100267812 | EntrezGene:LOC100267812 |
| InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 | PFAM:PF14009 | ProteinID:CCB61295 | ProteinID:CCB61295.1 |
| RefSeq:XP_002267421 | RefSeq:XP_002267421.1 | UniParc:UPI00015CA8EE | UniProt:F6I2X8 | wikigene:100267812 | wikigene:LOC100267812 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:16779776..16780479
Molecular Weight (calculated)
20890.7 Da
IEP (calculated)
5.022
GRAVY (calculated)
-0.245
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVFKGFG QVEEMIKVVT SNGGIMELYA PITAENITNE FPGHAIFRSP DLFSQPLLHS EELHAGELYY LLPQNAGRVG TVSETKLSDN TSTSSLITPY
101: RMSFDNQGLV KRSYPEVFPR YSSTGVWKVK LVISPEQLSE ILLQESRTEA LIESVRTVAK CGNGVSSMAS SDQWSVASSW KGSSEKNGGD V
101: RMSFDNQGLV KRSYPEVFPR YSSTGVWKVK LVISPEQLSE ILLQESRTEA LIESVRTVAK CGNGVSSMAS SDQWSVASSW KGSSEKNGGD V
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.