Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61920.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | CDY36943 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | CDX68463 | AT3G48550.1 | 21798944 |
| AT3G61920.1 | CDY60454 | AT3G48550.1 | 21798944 |
| AT3G61920.1 | CDY70544 | AT3G48550.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007641.1-P | Field mustard | cytosol | 98.77 | 85.64 |
| CDY62168 | Canola | cytosol | 97.55 | 85.03 |
| AT3G61920.1 | Thale cress | cytosol | 79.75 | 69.52 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 48.47 | 41.36 |
| KRH47813 | Soybean | nucleus | 45.4 | 37.56 |
| KRH06376 | Soybean | nucleus | 44.79 | 36.68 |
| Solyc10g005020.2.1 | Tomato | nucleus | 46.01 | 35.71 |
| PGSC0003DMT400029320 | Potato | cytosol | 46.63 | 35.51 |
| KRH68957 | Soybean | nucleus | 43.56 | 34.8 |
| KRG97236 | Soybean | cytosol | 44.17 | 33.64 |
| CDY03362 | Canola | cytosol | 25.77 | 27.27 |
| CDY66852 | Canola | cytosol | 25.77 | 27.27 |
Protein Annotations
| EnsemblPlants:CDY11383 | EnsemblPlantsGene:GSBRNA2T00049442001 | InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 | PFAM:PF14009 |
| ProteinID:CDY11383 | ProteinID:CDY11383.1 | SEG:seg | UniParc:UPI0004EDF864 | UniProt:A0A078FH31 | MapMan:35.2 |
Description
BnaA09g39490DBnaA09g39490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH31]
Coordinates
chrLK032011:-:166627..167192
Molecular Weight (calculated)
17366.7 Da
IEP (calculated)
7.042
GRAVY (calculated)
-0.174
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVCKGSG GSRKLYDKDD LLIRVVTPNG GVMELHPPIF ADFITNEFPG HVIHDTLSIR HSSPPLLHGE ELFPATPYRM SFGKTPVKSA ASGGGGGSSG
101: VWKVRLVISP EQLAEILAED VETEAFVETV RTVAKCAGQG GGANWRANSD QLSITSSFKG QLR
101: VWKVRLVISP EQLAEILAED VETEAFVETV RTVAKCAGQG GGANWRANSD QLSITSSFKG QLR
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.