CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH03966
KRH54542
KRH56919
KRH57236
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61920.1	KRH03466	AT3G47620.1	21798944
AT3G61920.1	KRH54542	AT3G47620.1	21798944
AT3G61920.1	KRH56919	AT3G47620.1	21798944
AT3G61920.1	KRH63357	AT3G47620.1	21798944
AT3G61920.1	KRH03966	AT3G48550.1	21798944
AT3G61920.1	KRH57236	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68957	Soybean	nucleus	72.9	76.47
KRH47813	Soybean	nucleus	55.14	59.9
VIT_15s0048g02650.t01	Wine grape	cytosol	51.4	57.59
KRH06376	Soybean	nucleus	53.27	57.29
Solyc10g005020.2.1	Tomato	nucleus	46.73	47.62
AT3G61920.1	Thale cress	cytosol	40.19	45.99
PGSC0003DMT400029320	Potato	cytosol	45.79	45.79
CDY62168	Canola	cytosol	39.72	45.45
CDY11383	Canola	cytosol	33.64	44.17
Bra007641.1-P	Field mustard	cytosol	38.78	44.15
KRH38354	Soybean	cytosol	40.19	34.96
KRG91592	Soybean	cytosol	37.85	34.47
KRH08843	Soybean	cytosol	38.32	33.61
KRH35232	Soybean	cytosol	38.78	33.6
KRH60065	Soybean	cytosol	30.37	30.37
KRH41344	Soybean	cytosol	27.57	28.23

Protein Annotations

EMBL:ACUP02012181	EnsemblPlants:KRG97236	EnsemblPlantsGene:GLYMA_19G259600	InterPro:DUF4228_plant	PANTHER:PTHR33148	PANTHER:PTHR33148:SF9
PFAM:PF14009	ProteinID:KRG97236	ProteinID:KRG97236.1	SEG:seg	UniParc:UPI0002954CF0	UniProt:K7N0E1
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:50324889..50325899

Molecular Weight (calculated)

23711.0 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.418

Length

214 amino acids

Sequence
(BLAST)

001: MGNCAFKGIS TSEGVSNDKM VKVLTPNGGI MELYTPITAE CITNEFSGHG IFRSRRDLFS EPLHHYEELH AGELYYLLPL DPSCRLSSTK SITRQLFNNA
101: ANLTPYRMST CDNNNNNNSR MWSEAAEVFP REGVWKVKLV ISPEQLLEIL SQESRTEAFV ESLRTVAKCG NGVPSAASSD HSSGGYHQLE GHCGSESSAN
201: RWRTRIGKLI VLGH

Best Arabidopsis Sequence Match ( AT3G61920.1 )
(BLAST)

001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW

Arabidopsis Description

At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.