Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11383 | Canola | cytosol | 69.52 | 79.75 |
| Bra007641.1-P | Field mustard | cytosol | 78.61 | 78.19 |
| CDY62168 | Canola | cytosol | 75.94 | 75.94 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 51.87 | 50.79 |
| KRH47813 | Soybean | nucleus | 47.06 | 44.67 |
| KRH06376 | Soybean | nucleus | 46.52 | 43.72 |
| Solyc10g005020.2.1 | Tomato | nucleus | 46.52 | 41.43 |
| KRH68957 | Soybean | nucleus | 44.92 | 41.18 |
| PGSC0003DMT400029320 | Potato | cytosol | 46.52 | 40.65 |
| KRG97236 | Soybean | cytosol | 45.99 | 40.19 |
| AT1G64700.1 | Thale cress | cytosol | 34.22 | 31.53 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825365 | UniProt:A0A178VKA6 | ProteinID:AEE80279.1 | ArrayExpress:AT3G61920 | EnsemblPlantsGene:AT3G61920 |
| RefSeq:AT3G61920 | TAIR:AT3G61920 | RefSeq:AT3G61920-TAIR-G | EnsemblPlants:AT3G61920.1 | TAIR:AT3G61920.1 | EMBL:AY062598 |
| Unigene:At.27290 | EMBL:BT006567 | ProteinID:CAB71899.1 | InterPro:DUF4228_plant | RefSeq:NP_191751.1 | ProteinID:OAP06777.1 |
| PFAM:PF14009 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0020094 | PO:PO:0020100 | PANTHER:PTHR33148 |
| PANTHER:PTHR33148:SF9 | UniProt:Q9M273 | UniParc:UPI00000A73E3 | SEG:seg | : | : |
Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
Coordinates
chr3:-:22932454..22933362
Molecular Weight (calculated)
19939.8 Da
IEP (calculated)
6.229
GRAVY (calculated)
-0.053
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.