CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH03966
KRH54542
KRH56919
KRH57236
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61920.1	KRH03466	AT3G47620.1	21798944
AT3G61920.1	KRH54542	AT3G47620.1	21798944
AT3G61920.1	KRH56919	AT3G47620.1	21798944
AT3G61920.1	KRH63357	AT3G47620.1	21798944
AT3G61920.1	KRH03966	AT3G48550.1	21798944
AT3G61920.1	KRH57236	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06376	Soybean	nucleus	92.89	91.96
VIT_15s0048g02650.t01	Wine grape	cytosol	60.41	62.3
KRH68957	Soybean	nucleus	57.87	55.88
KRG97236	Soybean	cytosol	59.9	55.14
Solyc10g005020.2.1	Tomato	nucleus	56.85	53.33
PGSC0003DMT400029320	Potato	cytosol	54.82	50.47
AT3G61920.1	Thale cress	cytosol	44.67	47.06
CDY11383	Canola	cytosol	37.56	45.4
CDY62168	Canola	cytosol	42.64	44.92
Bra007641.1-P	Field mustard	cytosol	42.13	44.15
KRH38354	Soybean	cytosol	45.18	36.18
KRG91592	Soybean	cytosol	43.15	36.17
KRH08843	Soybean	cytosol	44.67	36.07
KRH35232	Soybean	cytosol	43.65	34.82
KRH60065	Soybean	cytosol	31.98	29.44
KRH41344	Soybean	cytosol	30.96	29.19

Protein Annotations

EMBL:ACUP02004163	EnsemblPlants:KRH47813	EnsemblPlantsGene:GLYMA_07G050100	EntrezGene:102665356	InterPro:DUF4228_plant	PANTHER:PTHR33148
PANTHER:PTHR33148:SF9	PFAM:PF14009	ProteinID:KRH47813	ProteinID:KRH47813.1	SEG:seg	UniParc:UPI0001ED1913
UniProt:I1KHQ0	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4264207..4265588

Molecular Weight (calculated)

21814.9 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.423

Length

197 amino acids

Sequence
(BLAST)

001: MGNCVFKGLH HGVSENMMVK VVTSNGGIME LFSPITVECI TSEFPGHGIF RSRRDMFSEP LPKNEELRGG EVYYLLPLNP SSSRKSLTRQ FSDAEATLTP
101: YRMSTCEKNN NNNNVYSEPP EVIPRYNSSG VWKVKLVISP EKLSEILSQE SRTEALIESV RTVAKCGNGV PSSVANSDQW SVASSWKGSM SEKMGLQ

Best Arabidopsis Sequence Match ( AT3G61920.1 )
(BLAST)

001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW

Arabidopsis Description

At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.