Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97236 | Soybean | cytosol | 76.47 | 72.9 |
| KRH47813 | Soybean | nucleus | 55.88 | 57.87 |
| KRH06376 | Soybean | nucleus | 55.39 | 56.78 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 51.47 | 54.97 |
| Solyc10g005020.2.1 | Tomato | nucleus | 46.57 | 45.24 |
| AT3G61920.1 | Thale cress | cytosol | 41.18 | 44.92 |
| CDY11383 | Canola | cytosol | 34.8 | 43.56 |
| CDY62168 | Canola | cytosol | 39.71 | 43.32 |
| PGSC0003DMT400029320 | Potato | cytosol | 45.1 | 42.99 |
| Bra007641.1-P | Field mustard | cytosol | 39.22 | 42.55 |
| KRH38354 | Soybean | cytosol | 39.22 | 32.52 |
| KRG91592 | Soybean | cytosol | 37.25 | 32.34 |
| KRH35232 | Soybean | cytosol | 38.24 | 31.58 |
| KRH08843 | Soybean | cytosol | 37.75 | 31.56 |
| KRH60065 | Soybean | cytosol | 27.94 | 26.64 |
| KRH41344 | Soybean | cytosol | 25.49 | 24.88 |
Protein Annotations
| EMBL:ACUP02002128 | EnsemblPlants:KRH68957 | EnsemblPlantsGene:GLYMA_03G260700 | InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 |
| PFAM:PF14009 | ProteinID:KRH68957 | ProteinID:KRH68957.1 | UniParc:UPI0002961F6B | UniProt:K7KH54 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr3:-:45450482..45452882
Molecular Weight (calculated)
22443.6 Da
IEP (calculated)
5.670
GRAVY (calculated)
-0.310
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCAFKGIS TSEGASDDKM VKVVTPNGGI MELYTPITAE CITNEFSGQG IFRSRRDLFS EQLHHDEELH AGELYYLLPL DPSCRLSSTK NITRQLSNNA
101: ATLTPYRMFT CDINNNRMWS EAAEVFPRKG VWKVKLVINP EQLSEISSQE SRTDAFVETL RTVAKCGNGM PSGASSDHST VSPVTQNQVR DCGLLASVSN
201: MALI
101: ATLTPYRMFT CDINNNRMWS EAAEVFPRKG VWKVKLVINP EQLSEISSQE SRTDAFVETL RTVAKCGNGM PSGASSDHST VSPVTQNQVR DCGLLASVSN
201: MALI
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.