Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61920.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | CDY36943 | AT3G47620.1 | 21798944 |
| AT3G61920.1 | CDX68463 | AT3G48550.1 | 21798944 |
| AT3G61920.1 | CDY60454 | AT3G48550.1 | 21798944 |
| AT3G61920.1 | CDY70544 | AT3G48550.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11383 | Canola | cytosol | 85.03 | 97.55 |
| AT3G61920.1 | Thale cress | cytosol | 75.94 | 75.94 |
| VIT_15s0048g02650.t01 | Wine grape | cytosol | 47.06 | 46.07 |
| KRH47813 | Soybean | nucleus | 44.92 | 42.64 |
| KRH06376 | Soybean | nucleus | 44.38 | 41.71 |
| Solyc10g005020.2.1 | Tomato | nucleus | 44.92 | 40.0 |
| KRG97236 | Soybean | cytosol | 45.45 | 39.72 |
| KRH68957 | Soybean | nucleus | 43.32 | 39.71 |
| PGSC0003DMT400029320 | Potato | cytosol | 44.92 | 39.25 |
| CDY03362 | Canola | cytosol | 24.06 | 29.22 |
| CDY66852 | Canola | cytosol | 24.06 | 29.22 |
Protein Annotations
| EnsemblPlants:CDY62168 | EnsemblPlantsGene:GSBRNA2T00036024001 | InterPro:DUF4228_plant | PANTHER:PTHR33148 | PANTHER:PTHR33148:SF9 | PFAM:PF14009 |
| ProteinID:CDY62168 | ProteinID:CDY62168.1 | SEG:seg | UniParc:UPI0004EB00BD | UniProt:A0A078J9J0 | MapMan:35.2 |
Description
BnaC08g49020DBnaC08g49020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9J0]
Coordinates
chrLK034108:-:15497..16060
Molecular Weight (calculated)
20024.8 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.170
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCVCKGSG GSRKLYDKDD LLIRVVTPNG GVMELHPPIF ADFITNEFPG HVIHDTLSIR HSSPPLLHGE ELFPGNIYYL LPFSSSTAST VQQHYTELAT
101: PYRMSFGKTP VKAAASGGGG GSSGVWKVRL VISPEQLAEI LAEDVETEAF VESVRTVAKC GGQGGGANWR ANSDQLSITS SFKGQLR
101: PYRMSFGKTP VKAAASGGGG GSSGVWKVRL VISPEQLAEI LAEDVETEAF VESVRTVAKC GGQGGGANWR ANSDQLSITS SFKGQLR
001: MGNCVFKGNG GSRKLYDKDD SLIKVVTPNG GVMELHPPIF AEFITNEFPG HVIHDSLSLR HSSPPLLHGE ELFPGNIYYL LPLSSSAAAT AQLDSSDQLS
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
101: TPYRMSFGKT PIMAALSGGG CGVWKVRLVI SPEQLAEILA EDVETEALVE SVRTVAKCGG YGCGGGVHSR ANSDQLSVTS SFKGKLW
Arabidopsis Description
At3g61920 [Source:UniProtKB/TrEMBL;Acc:Q9M273]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.