Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g081180.1.1 | Tomato | nucleus | 82.69 | 84.73 |
| KRH36518 | Soybean | mitochondrion | 46.15 | 48.98 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 46.15 | 45.93 |
| KRH02010 | Soybean | cytosol | 43.27 | 45.45 |
| KRH51146 | Soybean | cytosol | 45.19 | 45.41 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 36.54 | 43.18 |
| AT4G03965.1 | Thale cress | cytosol | 42.79 | 42.58 |
| CDX82926 | Canola | nucleus | 39.9 | 41.29 |
| AT4G22250.1 | Thale cress | cytosol | 42.31 | 41.12 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 34.13 | 41.04 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 46.15 | 39.83 |
| CDX98736 | Canola | nucleus | 38.46 | 39.8 |
| Bra019391.1-P | Field mustard | nucleus | 37.5 | 39.59 |
| PGSC0003DMT400001832 | Potato | nucleus | 33.17 | 39.43 |
| CDX79140 | Canola | cytosol | 39.42 | 39.42 |
| CDX90849 | Canola | nucleus | 37.98 | 39.11 |
| CDY21289 | Canola | nucleus | 37.98 | 39.11 |
| Bra000784.1-P | Field mustard | nucleus | 37.98 | 39.11 |
| Bra013603.1-P | Field mustard | cytosol | 29.33 | 30.05 |
| PGSC0003DMT400003096 | Potato | nucleus | 11.06 | 11.5 |
| PGSC0003DMT400077589 | Potato | nucleus | 9.13 | 7.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400043086 | EnsemblPlantsGene:PGSC0003DMG400016713 | EntrezGene:102584506 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400016713 | RefSeq:XP_006348169.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295D1A4 |
| UniProt:M1BE21 | MapMan:35.2 | : | : | : | : |
Description
Zinc finger, RING-type [Source:PGSC_GENE;Acc:PGSC0003DMG400016713]
Coordinates
chr2:+:36853147..36854236
Molecular Weight (calculated)
22756.1 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.409
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELLRERMD GNDRVVRRRK SLTERLGSIA CCGTTLCLRP ASLSVMDDEE EESLQPPPEE AEVGRETPPE IESVNILCLA DHIPTGSGMN LAAALLAERN
101: LRSAQDSDGP GPNTSPLRSN EDGPGTGEGT PYRVSLMKLL EETNGWDEKE ELGVGNDTVC CVCMGRKKGA AFIPCGHTYC RVCSRELWLN RGCCPLCNRS
201: ILEILDIY
101: LRSAQDSDGP GPNTSPLRSN EDGPGTGEGT PYRVSLMKLL EETNGWDEKE ELGVGNDTVC CVCMGRKKGA AFIPCGHTYC RVCSRELWLN RGCCPLCNRS
201: ILEILDIY
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.