Factsheet for PGSC0003DMT400061842

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595
PGSC0003DMT400029320
PGSC0003DMT400031070
PGSC0003DMT400031088
PGSC0003DMT400054151
PGSC0003DMT400082721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22250.1	PGSC0003DMT400054151	AT1G02140.1	21798944
AT4G22250.1	PGSC0003DMT400031070	AT3G59220.1	21798944
AT4G22250.1	PGSC0003DMT400031088	AT3G59220.1	21798944
AT4G22250.1	PGSC0003DMT400029320	AT3G61920.1	21798944
AT4G22250.1	PGSC0003DMT400009595	AT4G05420.1	21798944
AT4G22250.1	PGSC0003DMT400082721	AT4G32295.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031830.1.1	Tomato	nucleus	59.34	58.37
GSMUA_Achr1P18240_001	Banana	nucleus	36.93	50.57
KRH36518	Soybean	mitochondrion	37.76	46.43
PGSC0003DMT400043086	Potato	nucleus	39.83	46.15
KRH02010	Soybean	cytosol	37.34	45.45
GSMUA_Achr3P12970_001	Banana	cytosol	32.37	45.09
KRH51146	Soybean	cytosol	37.76	43.96
CDY21289	Canola	nucleus	36.51	43.56
Bra000784.1-P	Field mustard	nucleus	36.1	43.07
CDX90849	Canola	nucleus	36.1	43.07
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	36.51	42.11
AT4G03965.1	Thale cress	cytosol	36.51	42.11
AT4G22250.1	Thale cress	cytosol	36.93	41.59
Bra019391.1-P	Field mustard	nucleus	33.2	40.61
PGSC0003DMT400001832	Potato	nucleus	29.46	40.57
CDX82926	Canola	nucleus	33.61	40.3
CDX98736	Canola	nucleus	31.95	38.31
CDX79140	Canola	cytosol	31.12	36.06
Bra013603.1-P	Field mustard	cytosol	24.07	28.57
PGSC0003DMT400003096	Potato	nucleus	10.79	13.0
PGSC0003DMT400077589	Potato	nucleus	9.96	9.41

Protein Annotations

EntrezGene:102605265	Gene3D:3.30.40.10	MapMan:35.2	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1C847
PFAM:PF13920	EnsemblPlantsGene:PGSC0003DMG400024061	PGSC:PGSC0003DMG400024061	EnsemblPlants:PGSC0003DMT400061842	PFscan:PS50089	PANTHER:PTHR12183
PANTHER:PTHR12183:SF20	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294B661	RefSeq:XP_006343415.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Zinc finger, RING-type [Source:PGSC_GENE;Acc:PGSC0003DMG400024061]

Coordinates

chr3:+:2719360..2720840

Molecular Weight (calculated)

26328.2 Da

IEP (calculated)

5.022

GRAVY (calculated)

-0.450

Length

241 amino acids

Sequence
(BLAST)

001: MDGGDRVIRR RKSLTERLGL KRIGCCGSTW GIMPATTFSV VDDEDENDDV EVMSHHIHTP SETPSAMTTC LAVAGGGSSG MNLAAALAAE RHFRADYDNN
101: NEVNIHPGSR PGPLRPNESG PMNVPTYDNN EVNIRPGPNY RPDEGVSGNV PGTPTRMSLM RLLEETEVYE GEFLMEKEEE GGGGVGVGSD SVCCVCMRRK
201: KGAAFIPCGH TFCRVCSREL WVNRGYCPLC NRSILEILDI Y

Best Arabidopsis Sequence Match ( AT4G03965.1 )
(BLAST)

001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.