Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79140 | Canola | cytosol | 75.12 | 72.6 |
| Bra013603.1-P | Field mustard | cytosol | 71.64 | 70.94 |
| AT4G22250.1 | Thale cress | cytosol | 70.15 | 65.89 |
| CDX98736 | Canola | nucleus | 64.68 | 64.68 |
| CDY21289 | Canola | nucleus | 54.73 | 54.46 |
| CDX90849 | Canola | nucleus | 54.23 | 53.96 |
| PGSC0003DMT400043086 | Potato | nucleus | 41.29 | 39.9 |
| Solyc02g081180.1.1 | Tomato | nucleus | 40.3 | 39.9 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 34.33 | 39.2 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 32.34 | 37.57 |
| CDY08650 | Canola | cytosol | 36.82 | 35.07 |
| CDY32036 | Canola | cytosol | 35.32 | 33.65 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 40.3 | 33.61 |
| Solyc03g031830.1.1 | Tomato | nucleus | 40.8 | 33.47 |
| CDX77379 | Canola | cytosol | 14.93 | 12.0 |
| CDY69745 | Canola | cytosol | 14.43 | 11.84 |
| CDY05318 | Canola | nucleus | 7.96 | 7.55 |
| CDY24647 | Canola | nucleus | 7.96 | 7.51 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 10.95 | 6.51 |
Protein Annotations
| EnsemblPlants:CDX82926 | EnsemblPlantsGene:GSBRNA2T00138313001 | Gene3D:3.30.40.10 | GO:A0A078D0L0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDX82926 | ProteinID:CDX82926.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDDAEA |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC01g13760D
Coordinates
chrLK031830:-:1382977..1383582
Molecular Weight (calculated)
22387.7 Da
IEP (calculated)
7.884
GRAVY (calculated)
-0.461
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDFDLGTTR RMTTETHRTT TFLDLLRRQM SVADRTRRKR TLRERLRFKF TACCGPTLNN TTTSATLHSP TSREDEIQFV TGSDTGSGSG MNLATALEAE
101: RYNRGEPAVD MTPRRVSLMR LLDETAEGVD DDGRETEIST ASLGTLTGND SVCCVCMGRK KGAAFIPCGH TFCRVCSREL WLNRGSCPLC NRPIIETLDI
201: F
101: RYNRGEPAVD MTPRRVSLMR LLDETAEGVD DDGRETEIST ASLGTLTGND SVCCVCMGRK KGAAFIPCGH TFCRVCSREL WLNRGSCPLC NRPIIETLDI
201: F
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.