Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000784.1-P | Field mustard | nucleus | 66.03 | 68.32 |
| CDX90849 | Canola | nucleus | 66.03 | 68.32 |
| CDY21289 | Canola | nucleus | 65.55 | 67.82 |
| AT4G22250.1 | Thale cress | cytosol | 62.68 | 61.22 |
| Solyc02g081180.1.1 | Tomato | nucleus | 44.02 | 45.32 |
| PGSC0003DMT400043086 | Potato | nucleus | 42.58 | 42.79 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 35.89 | 42.61 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 34.45 | 41.62 |
| AT1G62370.1 | Thale cress | cytosol | 37.32 | 38.24 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 42.11 | 36.51 |
| Solyc03g031830.1.1 | Tomato | nucleus | 42.58 | 36.33 |
| AT3G25030.4 | Thale cress | cytosol | 13.4 | 11.2 |
| AT4G13100.2 | Thale cress | extracellular | 10.05 | 7.92 |
| AT3G07120.1 | Thale cress | nucleus | 10.53 | 6.11 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:825707 | ProteinID:AAV63915.1 | ProteinID:AEE82362.1 | ArrayExpress:AT4G03965 |
| EnsemblPlantsGene:AT4G03965 | RefSeq:AT4G03965 | TAIR:AT4G03965 | RefSeq:AT4G03965-TAIR-G | EnsemblPlants:AT4G03965.1 | TAIR:AT4G03965.1 |
| EMBL:AY735635 | GO:GO:0008150 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_680579.2 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | UniProt:Q5XV87 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00004431B6 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
Coordinates
chr4:+:1889360..1890412
Molecular Weight (calculated)
23201.7 Da
IEP (calculated)
6.495
GRAVY (calculated)
-0.436
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.