Factsheet for Bra034103.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41334	Canola	cytosol	99.69	99.38
GSMUA_AchrUn_...	Banana	cytosol	42.01	74.86
Solyc04g016400.2.1	Tomato	cytosol	51.72	68.18
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	58.93	68.12
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	59.25	67.74
Os12t0137100-01	Rice	cytosol, nucleus, plastid	61.44	67.12
EES09228	Sorghum	cytosol	63.95	67.11
Zm00001d052458_P001	Maize	extracellular	61.76	66.55
Os11t0140600-01	Rice	cytosol	63.01	65.26
PGSC0003DMT400033117	Potato	cytosol	52.35	64.98
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	61.13	64.36
TraesCS4D01G127600.1	Wheat	cytosol	60.81	60.06
TraesCS4B01G132800.1	Wheat	nucleus	61.44	59.76
TraesCS4A01G186100.1	Wheat	golgi	60.81	59.69
Bra009480.1-P	Field mustard	cytosol	66.77	58.36
Solyc10g079890.1.1	Tomato	plastid	62.07	58.24
PGSC0003DMT400076703	Potato	cytosol, plastid	62.07	57.56
TraesCS5D01G142800.1	Wheat	nucleus	59.87	57.53
TraesCS5A01G136100.1	Wheat	nucleus	59.87	57.36
AT3G10300.6	Thale cress	cytosol	67.08	56.76
HORVU5Hr1G043650.2	Barley	plastid	62.07	51.43
HORVU4Hr1G026030.9	Barley	cytosol	50.47	49.24
Bra005797.1-P	Field mustard	cytosol	63.01	48.91
KRH72037	Soybean	cytosol, plasma membrane, plastid	36.36	44.79
Bra000510.1-P	Field mustard	cytosol	25.71	36.77

Protein Annotations

EnsemblPlants:Bra034103.1	EnsemblPlants:Bra034103.1-P	EnsemblPlantsGene:Bra034103	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	PFAM:PF13202	PFAM:PF13405	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00025441A8	UniProt:M4EZ60	MapMan:35.1	:

Description

AT3G10300 (E=2e-089) | calcium-binding EF hand family protein

Coordinates

chrA01:-:27437891..27439247

Molecular Weight (calculated)

33729.2 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.521

Length

319 amino acids

Sequence
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QQPYGSSGNP PPQQPYGSSG GNPPPYGSSA ASPYAVPYGS QPPPSSAPYG APPSAPYASP PGDHKPHKEK PQAAYGSPGG
101: YGSSGGYGGY GAPPSGHGGG YGAPPPPPQQ AGYGSPFASL VPSAFPPGTD PNIVTCFQAA DRDQSGFIDD KELQGALSSY NQSFSMRTVH LLMYLFTNSN
201: VRKIGPKEFT SLFYSLQSWR TIFERFDKDR SGKIDTNELR DALLSLGFSV SPVVLDLLVS KFDKSGGRNR AIEYDNFIEC CLTVKGLTEK FKEKDTALSG
301: SATFNYEAFM LTVLPFLVA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.