Factsheet for GSMUA_Achr6P23210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11610_001
GSMUA_Achr3P27600_001
GSMUA_Achr4P04500_001
GSMUA_Achr4P17040_001
GSMUA_Achr8P03600_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT1G55520.1	GSMUA_Achr3P27600_001	AT4G17750.1	9801140
AT1G55520.1	GSMUA_Achr4P04500_001	AT4G17750.1	9801140
AT1G55520.1	GSMUA_Achr4P17040_001	AT4G17750.1	9801140
AT1G55520.1	GSMUA_Achr8P03600_001	AT5G23080.1	16024589
AT3G13445.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT3G13445.1	GSMUA_Achr3P27600_001	AT4G17750.1	9801140
AT3G13445.1	GSMUA_Achr4P04500_001	AT4G17750.1	9801140
AT3G13445.1	GSMUA_Achr4P17040_001	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	96.5	96.5
Solyc01g028930.2.1	Tomato	nucleus	97.5	96.06
KRH65451	Soybean	nucleus	96.0	96.0
KRH08285	Soybean	nucleus	96.0	96.0
Bra011920.1-P	Field mustard	nucleus	95.5	95.5
KRH40768	Soybean	nucleus	95.5	95.5
CDY08246	Canola	nucleus	95.5	95.5
CDY26099	Canola	nucleus	95.5	95.5
KRH00416	Soybean	nucleus	95.0	95.0
TraesCS4A01G298000.1	Wheat	nucleus	95.0	95.0
TraesCS4D01G014000.2	Wheat	nucleus	95.0	95.0
AT1G55520.1	Thale cress	nucleus	94.5	94.5
AT3G13445.1	Thale cress	nucleus	93.5	93.5
TraesCS5A01G022000.1	Wheat	nucleus	93.5	93.5
TraesCS5D01G027800.3	Wheat	nucleus	93.5	93.5
CDY10555	Canola	nucleus	93.5	93.5
CDY02435	Canola	nucleus	93.5	93.5
Bra030855.1-P	Field mustard	nucleus	93.5	93.5
Os03t0657000-01	Rice	nucleus	94.5	93.1
Bra027434.1-P	Field mustard	nucleus	92.5	92.5
TraesCS5B01G018500.1	Wheat	nucleus	92.5	92.04
GSMUA_Achr1P26830_001	Banana	nucleus	99.5	91.28
Os12t0580300-01	Rice	nucleus	93.5	89.9
GSMUA_Achr7P01480_001	Banana	cytosol, nucleus, plasma membrane	95.0	82.61
CDY56078	Canola	nucleus	53.0	82.17
GSMUA_Achr10P...	Banana	nucleus	84.5	81.25
TraesCS4B01G015700.2	Wheat	nucleus	86.5	77.23
GSMUA_Achr6P29890_001	Banana	nucleus	79.0	76.33
GSMUA_Achr5P08990_001	Banana	nucleus	98.0	69.01
CDY23601	Canola	mitochondrion, nucleus, plastid	92.5	58.18
HORVU4Hr1G002400.5	Barley	golgi	95.0	56.38
Zm00001d013856_P001	Maize	nucleus	41.0	52.56

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G23210_001	EnsemblPlants:GSMUA_Achr6P23210_001	EnsemblPlants:GSMUA_Achr6T23210_001	InterPro:IPR012295	UniProt:M0T9G9
HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36
SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI000295A0E0

Description

TATA-box-binding protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G23210_001]

Coordinates

chr6:+:23275311..23279128

Molecular Weight (calculated)

22312.4 Da

IEP (calculated)

10.140

GRAVY (calculated)

-0.075

Length

200 amino acids

Sequence
(BLAST)

001: MADQGLEGSQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF CSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKVRDE TYTAFENIYP VLTEFRKSQQ

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.