Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P04500_001 | Banana | nucleus | 79.11 | 76.77 |
| GSMUA_Achr3P06020_001 | Banana | nucleus | 22.54 | 63.16 |
| Os03t0854500-01 | Rice | nucleus | 56.81 | 47.83 |
| VIT_16s0039g01840.t01 | Wine grape | nucleus, plastid | 57.28 | 47.66 |
| TraesCS5D01G553300.1 | Wheat | nucleus | 57.51 | 46.93 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 57.28 | 46.83 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 53.52 | 46.82 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 57.28 | 46.12 |
| KRH74387 | Soybean | nucleus | 52.11 | 45.31 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 30.75 | 45.17 |
| Zm00001d034886_P001 | Maize | nucleus | 55.63 | 44.97 |
| EER93074 | Sorghum | nucleus | 55.63 | 44.97 |
| KRH07474 | Soybean | nucleus | 53.05 | 44.31 |
| KRH39566 | Soybean | nucleus | 51.64 | 44.0 |
| VIT_02s0012g01810.t01 | Wine grape | nucleus | 50.94 | 43.75 |
| PGSC0003DMT400046000 | Potato | nucleus | 52.11 | 43.7 |
| CDY16977 | Canola | nucleus | 44.13 | 42.63 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 57.28 | 42.51 |
| AT5G16820.2 | Thale cress | nucleus | 47.42 | 42.0 |
| Solyc08g005170.2.1 | Tomato | nucleus | 51.88 | 41.94 |
| CDY38085 | Canola | nucleus | 42.96 | 41.69 |
| KRH77766 | Soybean | nucleus | 45.07 | 41.38 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 29.81 | 41.23 |
| CDX85486 | Canola | nucleus | 42.72 | 41.18 |
| CDY28731 | Canola | nucleus | 42.02 | 41.05 |
| Bra023584.1-P | Field mustard | nucleus | 42.49 | 40.95 |
| PGSC0003DMT400008199 | Potato | nucleus | 47.18 | 40.85 |
| AT1G32330.1 | Thale cress | nucleus | 46.48 | 40.82 |
| Bra040179.1-P | Field mustard | nucleus | 41.31 | 40.74 |
| Solyc03g097120.2.1 | Tomato | nucleus | 46.95 | 40.73 |
| CDX78797 | Canola | nucleus | 41.08 | 40.7 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 26.06 | 40.66 |
| KRH27709 | Soybean | nucleus | 44.13 | 40.52 |
| Bra021381.1-P | Field mustard | nucleus | 42.96 | 40.31 |
| Zm00001d012823_P001 | Maize | nucleus | 52.58 | 40.29 |
| Bra032023.1-P | Field mustard | nucleus | 42.96 | 40.13 |
| CDY58547 | Canola | nucleus | 42.72 | 40.09 |
| Solyc08g076590.2.1 | Tomato | nucleus | 46.01 | 40.0 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 29.34 | 39.94 |
| GSMUA_Achr2P21640_001 | Banana | nucleus | 30.99 | 39.76 |
| CDY60785 | Canola | nucleus | 40.61 | 39.59 |
| PGSC0003DMT400038381 | Potato | nucleus | 46.24 | 39.56 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 20.42 | 39.37 |
| AT3G02990.1 | Thale cress | nucleus | 42.72 | 38.89 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 30.28 | 38.74 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 30.28 | 38.62 |
| Bra001071.1-P | Field mustard | nucleus | 40.85 | 38.41 |
| CDX74228 | Canola | nucleus | 40.85 | 38.24 |
| CDX92026 | Canola | nucleus | 39.91 | 37.95 |
| PGSC0003DMT400069550 | Potato | nucleus | 42.72 | 37.84 |
| Bra008593.1-P | Field mustard | nucleus | 42.72 | 37.68 |
| CDX93842 | Canola | nucleus | 42.96 | 37.58 |
| Bra023258.1-P | Field mustard | nucleus | 42.96 | 37.58 |
| CDX69418 | Canola | nucleus | 42.72 | 37.37 |
| Solyc06g072750.2.1 | Tomato | nucleus | 42.25 | 37.34 |
| CDY01288 | Canola | nucleus | 42.96 | 37.2 |
| AT4G17750.1 | Thale cress | nucleus | 42.25 | 36.36 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 17.84 | 36.36 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 21.6 | 33.33 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 22.07 | 32.53 |
| Bra035507.1-P | Field mustard | nucleus | 32.16 | 32.08 |
| GSMUA_Achr6P27750_001 | Banana | nucleus | 29.11 | 31.55 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 23.94 | 31.48 |
| GSMUA_Achr8P28330_001 | Banana | nucleus | 23.94 | 31.19 |
| GSMUA_Achr9P01640_001 | Banana | nucleus | 27.23 | 30.45 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 31.69 | 29.8 |
| CDY44649 | Canola | nucleus | 33.1 | 29.68 |
| GSMUA_Achr10P... | Banana | nucleus | 20.19 | 28.2 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 23.71 | 27.82 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 30.99 | 27.16 |
| CDX84097 | Canola | nucleus | 15.49 | 24.54 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 28.87 | 22.49 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr3G27600_001 | EnsemblPlants:GSMUA_Achr3P27600_001 | EnsemblPlants:GSMUA_Achr3T27600_001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| UniProt:M0SIC6 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF162 |
| SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0002955971 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Heat stress transcription factor A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G27600_001]
Coordinates
chr3:-:27132751..27137417
Molecular Weight (calculated)
47514.4 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.684
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGEGGDADG ASASASTVAT TANACLNGGA PPPFLSKTYE MVDDSATDAI VSWGPANNSF VVWNTIEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD
101: RWEFANEGFL RGQKHLLKAI SRRKSTHGHN QQPQQQQQQQ PQTQNTIEEL VRLRQQQQTT DQQLNTLGQR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQLVQ
201: QNDNNRRIVG VSKKRRLPRQ ENELDGETTM QDGQIIKYQP LINEAAKAML MQILKYDTSP RLESFGNSQN FLIENYSSPL EAFDSSSLKR TSGVTLSEIQ
301: SSSNVAHMVT TTKMPNMDLS YAGSNGGSIP MNPISDVMDE LAGIETEKFT SDMDILSDDE QLPSINDPFW EQFLTASPLL GDADEVDSDL HETEEIGLEA
401: GNYGDSTQSM DHLTMQMGHL APHSNK
101: RWEFANEGFL RGQKHLLKAI SRRKSTHGHN QQPQQQQQQQ PQTQNTIEEL VRLRQQQQTT DQQLNTLGQR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQLVQ
201: QNDNNRRIVG VSKKRRLPRQ ENELDGETTM QDGQIIKYQP LINEAAKAML MQILKYDTSP RLESFGNSQN FLIENYSSPL EAFDSSSLKR TSGVTLSEIQ
301: SSSNVAHMVT TTKMPNMDLS YAGSNGGSIP MNPISDVMDE LAGIETEKFT SDMDILSDDE QLPSINDPFW EQFLTASPLL GDADEVDSDL HETEEIGLEA
401: GNYGDSTQSM DHLTMQMGHL APHSNK
001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K
Arabidopsis Description
HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.