Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P19330_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | GSMUA_Achr8P19330_001 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | GSMUA_AchrUn_... | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P30990_001 | Banana | nucleus | 65.25 | 68.86 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 28.85 | 56.77 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 41.97 | 55.41 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 28.52 | 53.7 |
| Zm00001d016255_P001 | Maize | nucleus | 44.59 | 52.92 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 39.34 | 52.4 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 22.95 | 52.24 |
| Zm00001d046299_P001 | Maize | nucleus | 44.59 | 50.94 |
| KXG29862 | Sorghum | nucleus | 44.59 | 50.94 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 45.57 | 50.92 |
| EER89919 | Sorghum | nucleus | 46.23 | 50.54 |
| TraesCSU01G127200.1 | Wheat | nucleus | 44.92 | 49.64 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 43.61 | 49.63 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 44.26 | 48.91 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 43.93 | 48.73 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 43.61 | 48.54 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 42.3 | 48.5 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 41.64 | 48.29 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 41.97 | 48.12 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 41.64 | 47.92 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 42.95 | 47.81 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 42.62 | 47.62 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 37.7 | 47.33 |
| Os02t0232000-01 | Rice | nucleus | 46.23 | 47.32 |
| TraesCSU01G127300.1 | Wheat | nucleus | 42.62 | 47.27 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 42.3 | 43.43 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 36.39 | 42.37 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 44.26 | 40.18 |
| GSMUA_Achr3P06020_001 | Banana | nucleus | 18.36 | 36.84 |
| Bra013253.1-P | Field mustard | nucleus | 33.44 | 36.3 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 32.13 | 35.51 |
| CDX77420 | Canola | nucleus | 34.75 | 33.76 |
| Bra015050.1-P | Field mustard | nucleus | 34.1 | 33.66 |
| CDY39545 | Canola | nucleus | 34.43 | 33.44 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 22.62 | 33.01 |
| CDX93024 | Canola | nucleus | 33.11 | 33.01 |
| CDY50608 | Canola | nucleus | 33.77 | 32.7 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 34.75 | 32.22 |
| KRH39283 | Soybean | nucleus | 33.77 | 32.19 |
| AT3G24520.1 | Thale cress | nucleus | 34.75 | 32.12 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 29.51 | 31.03 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 25.9 | 28.94 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 30.16 | 28.4 |
| PGSC0003DMT400001025 | Potato | nucleus | 33.44 | 27.72 |
| Solyc12g007070.1.1 | Tomato | nucleus | 33.44 | 27.64 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 20.0 | 27.6 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 27.21 | 26.95 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 27.54 | 26.84 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 31.8 | 26.72 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 28.52 | 26.13 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 28.52 | 26.05 |
| CDY43158 | Canola | nucleus | 25.9 | 25.82 |
| GSMUA_Achr2P21640_001 | Banana | nucleus | 25.57 | 23.49 |
| GSMUA_Achr8P28330_001 | Banana | nucleus | 23.28 | 21.71 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 29.18 | 20.27 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 28.2 | 20.19 |
| GSMUA_Achr9P01640_001 | Banana | nucleus | 24.92 | 19.95 |
| GSMUA_Achr6P27750_001 | Banana | nucleus | 24.26 | 18.83 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 25.9 | 17.44 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 27.21 | 17.04 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 25.9 | 16.26 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 25.9 | 14.44 |
| CDY43157 | Canola | cytosol | 0.98 | 3.33 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr10G27810_001 | EnsemblPlants:GSMUA_Achr10P27810_001 | EnsemblPlants:GSMUA_Achr10T27810_001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| UniProt:M0RM05 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 |
| SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI00029634A5 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G27810_001]
Coordinates
chr10:-:30791163..30792852
Molecular Weight (calculated)
33800.8 Da
IEP (calculated)
5.476
GRAVY (calculated)
-0.564
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDDPSTNAV IAWGRDNNSF VVVDPFAFSQ LLLPSHFKHG NFSSFVRQLN TYGFRKVDPD RWEFAHASFL RGQTNLLRLI VRRNSGCGKK NERGEEEGEE
101: EEGMEERVAA EVVRLKQEQR RIAERVEEMW RRVQETERKP RQMLAFLVKV AGDPKLLGRL GAGPAPGAIE GGEKRARLRS GDEYERVLEM EGGVGRWQFD
201: GQSMVAGDGE EGMMLCGGDG GGAHQFPGTS DPIGFYGGPV WVGGEFGGVE GDGLGGGSAA YPFPSHPAFN KATDHESLYF GIKKCLHLNQ QNVFDFYAKI
301: SCENY
101: EEGMEERVAA EVVRLKQEQR RIAERVEEMW RRVQETERKP RQMLAFLVKV AGDPKLLGRL GAGPAPGAIE GGEKRARLRS GDEYERVLEM EGGVGRWQFD
201: GQSMVAGDGE EGMMLCGGDG GGAHQFPGTS DPIGFYGGPV WVGGEFGGVE GDGLGGGSAA YPFPSHPAFN KATDHESLYF GIKKCLHLNQ QNVFDFYAKI
301: SCENY
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.