Factsheet for TraesCS4B01G383400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G383200.1	Wheat	nucleus	66.79	77.49
TraesCS4B01G383300.1	Wheat	nucleus	76.87	74.91
TraesCS3B01G568200.1	Wheat	nucleus	63.81	74.67
TraesCS3B01G568300.1	Wheat	nucleus	76.12	74.45
TraesCS4B01G385800.1	Wheat	nucleus	68.66	67.4
Zm00001d016255_P001	Maize	nucleus	57.09	59.53
KXG29862	Sorghum	nucleus	58.21	58.43
TraesCS7B01G272500.1	Wheat	nucleus	54.85	55.89
Os02t0232000-01	Rice	nucleus	59.7	53.69
GSMUA_Achr4P30990_001	Banana	nucleus	51.49	47.75
TraesCS3B01G314600.1	Wheat	nucleus	38.81	45.81
GSMUA_Achr10P...	Banana	nucleus	49.63	43.61
CDX93024	Canola	nucleus	40.3	35.29
Bra013253.1-P	Field mustard	nucleus	36.57	34.88
KRH39283	Soybean	nucleus	40.67	34.06
Bra015050.1-P	Field mustard	nucleus	39.18	33.98
CDY50608	Canola	nucleus	39.93	33.97
TraesCS3B01G425200.1	Wheat	nucleus	37.31	32.89
CDX77420	Canola	nucleus	38.43	32.8
CDY39545	Canola	nucleus	38.43	32.8
TraesCS3B01G255600.1	Wheat	nucleus	39.18	32.31
AT3G24520.1	Thale cress	nucleus	39.55	32.12
VIT_11s0016g03940.t01	Wine grape	nucleus	37.31	30.4
TraesCS1B01G396000.1	Wheat	nucleus	37.31	27.93
TraesCS7B01G267300.1	Wheat	nucleus	36.57	27.76
TraesCS5B01G440700.1	Wheat	nucleus	36.57	27.76
Solyc12g007070.1.1	Tomato	nucleus	36.94	26.83
CDY43158	Canola	nucleus	30.6	26.8
PGSC0003DMT400001025	Potato	nucleus	36.19	26.36
TraesCS4B01G278100.1	Wheat	nucleus	33.21	26.1
TraesCS4B01G239700.1	Wheat	nucleus	32.84	22.92
TraesCS2B01G105100.1	Wheat	nucleus	33.58	22.22
TraesCS3B01G438900.1	Wheat	nucleus	32.84	20.32
TraesCS6B01G127000.1	Wheat	nucleus	33.21	19.56
TraesCS5B01G556200.1	Wheat	nucleus	37.69	19.09
TraesCS2B01G232000.2	Wheat	nucleus	32.46	18.32
TraesCS3B01G323800.1	Wheat	nucleus	28.36	17.23
CDY43157	Canola	cytosol	0.37	1.11

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015
PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS4B01G383400	EnsemblPlants:TraesCS4B01G383400.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:662535937..662536743

Molecular Weight (calculated)

29998.3 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.510

Length

268 amino acids

Sequence
(BLAST)

001: MSGDGGGMVA PFVAKTYAMV EDPATDAVVA WGPASNSFLV ADPFAFSEML LPAHFKHSNF SSFVSQLNTY GFRKVDPDRW EFAHASFLRG QTHLLRRIVR
101: RQNGGKRGGK DGRNGKEEDD EESSSTMLAM EVVRLRNEQR ATEERVAEMW RRVQDAERRP KQMLAFLLKV VGDPDVLHRL VGNSSRDGGL FPGEGAEVQR
201: PRLLLKREVQ VGEQMHVDGE WQLYGISRQE FFIRESPVDF AGFCTGGDGF SDVPTDDPPY AFTVDGSY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.