Factsheet for Os02t0232000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0588500-01
Os04t0117200-01
Os09t0361100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	Os04t0117200-01	AT1G19980.1	21798944
AT3G24520.1	Os01t0588500-01	AT3G01300.1	21798944
AT3G24520.1	Os09t0361100-01	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29862	Sorghum	nucleus	64.43	71.91
Zm00001d016255_P001	Maize	nucleus	61.07	70.82
HORVU7Hr1G055320.1	Barley	mitochondrion, nucleus	36.24	66.67
HORVU2Hr1G043030.1	Barley	nucleus	34.23	65.81
HORVU7Hr1G034320.1	Barley	nucleus, plastid	28.86	64.18
TraesCS4B01G383200.1	Wheat	nucleus	49.66	64.07
TraesCS3B01G568200.1	Wheat	nucleus	46.98	61.14
TraesCSU01G127200.1	Wheat	nucleus	56.38	60.87
TraesCS4B01G385800.1	Wheat	nucleus	55.7	60.81
TraesCS5A01G548700.1	Wheat	nucleus	55.37	60.22
TraesCS4D01G358900.1	Wheat	nucleus	55.7	60.14
TraesCS4B01G383300.1	Wheat	nucleus	55.37	60.0
TraesCS4B01G383400.1	Wheat	nucleus	53.69	59.7
TraesCSU01G127300.1	Wheat	nucleus	54.7	59.27
HORVU7Hr1G119990.1	Barley	nucleus	48.32	59.26
TraesCS5A01G550700.1	Wheat	nucleus	54.03	58.97
TraesCS3B01G568300.1	Wheat	nucleus	54.03	58.76
HORVU4Hr1G090090.4	Barley	nucleus, plastid	55.37	55.56
GSMUA_Achr4P30990_001	Banana	nucleus	51.68	53.29
TraesCS5A01G524000.1	Wheat	nucleus	46.31	52.67
HORVU4Hr1G090850.1	Barley	nucleus	56.38	50.0
GSMUA_Achr10P...	Banana	nucleus	47.32	46.23
Os01t0733200-01	Rice	nucleus	36.24	43.2
Bra013253.1-P	Field mustard	nucleus	34.56	36.65
CDX93024	Canola	nucleus	36.91	35.95
KRH39283	Soybean	nucleus	38.59	35.94
Bra015050.1-P	Field mustard	nucleus	36.58	35.28
CDY50608	Canola	nucleus	36.58	34.6
CDX77420	Canola	nucleus	36.24	34.39
CDY39545	Canola	nucleus	35.91	34.08
Os01t0625300-01	Rice	nucleus	38.26	33.63
AT3G24520.1	Thale cress	nucleus	36.91	33.33
VIT_11s0016g03940.t01	Wine grape	nucleus	34.9	31.61
Os06t0565200-00	Rice	nucleus	32.89	29.61
PGSC0003DMT400001025	Potato	nucleus	36.24	29.35
Solyc12g007070.1.1	Tomato	nucleus	36.24	29.27
CDY43158	Canola	nucleus	28.86	28.1
Os07t0178600-01	Rice	nucleus	34.9	27.96
Os10t0419300-00	Rice	nucleus	32.21	26.82
Os03t0161900-02	Rice	nucleus	32.89	25.86
Os03t0224700-01	Rice	nucleus	31.21	22.68
Os01t0571300-01	Rice	mitochondrion, nucleus	30.54	22.64
Os03t0854500-01	Rice	nucleus	32.21	18.97
Os05t0530400-01	Rice	nucleus	29.19	18.95
Os02t0496100-01	Rice	nucleus	29.87	18.74
Os01t0749300-02	Rice	nucleus	27.52	18.64
Os02t0527300-01	Rice	nucleus	30.54	18.27
CDY43157	Canola	cytosol	1.01	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:4328809	EMBL:AK106488	ProteinID:BAD27705.1	ProteinID:BAF08284.1
ProteinID:BAS77784.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EnsemblPlantsGene:Os02g0232000	EnsemblPlants:Os02t0232000-01	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF171	UniProt:Q6EUG4	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI00003CE4B6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015623571.1	SEG:seg

Description

HEAT STRESS TRANSCRIPTION FACTOR C2ASimilar to Heat shock transcription factor 29 (Fragment). (Os02t0232000-01)

Coordinates

chr2:+:7464028..7465505

Molecular Weight (calculated)

31921.2 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.311

Length

298 amino acids

Sequence
(BLAST)

001: MTTTTAEGGG GVAPFVAKTY RMVDDPATDG VIAWGRDSNS FVVADPFAFS QTLLPAHFKH SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR
101: IVRRSSGGGG AKRKEEAGGC GGGGEAAAGD VDEESAVVAL EVARLRREQR EIEGRVAAMW RRVQETERRP KQMLAFLVKV VGDPQVLRRL VDRDNTNAAA
201: SNADDSAVHH QVKRPRLLLD SSSTTTTHGD RHLVTAAADG FYAGGCGPEA AAAAAFVPDD AVDFTGLYTG GDGFGNAVVD AGVDYPPAYA FPVVDSGY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.