Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013253.1-P | Field mustard | nucleus | 90.85 | 98.93 |
| CDY50608 | Canola | nucleus | 96.41 | 93.65 |
| CDX77420 | Canola | nucleus | 87.25 | 85.03 |
| CDY39545 | Canola | nucleus | 86.6 | 84.39 |
| AT3G24520.1 | Thale cress | nucleus | 83.99 | 77.88 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 52.94 | 49.24 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 21.24 | 48.51 |
| KRH39283 | Soybean | nucleus | 49.35 | 47.19 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 24.84 | 46.91 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 22.22 | 43.87 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 32.03 | 42.42 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 31.05 | 41.85 |
| Zm00001d016255_P001 | Maize | nucleus | 34.31 | 40.86 |
| Solyc12g007070.1.1 | Tomato | nucleus | 48.69 | 40.38 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 35.29 | 40.3 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 31.05 | 40.25 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 35.62 | 39.93 |
| TraesCSU01G127200.1 | Wheat | nucleus | 35.95 | 39.86 |
| Zm00001d046299_P001 | Maize | nucleus | 34.64 | 39.7 |
| PGSC0003DMT400001025 | Potato | nucleus | 47.71 | 39.67 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 31.05 | 39.42 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 35.29 | 39.42 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 35.29 | 39.13 |
| KXG29862 | Sorghum | nucleus | 33.99 | 38.95 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 29.09 | 38.86 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 34.64 | 38.83 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 36.6 | 38.75 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 33.66 | 38.72 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 34.64 | 38.69 |
| Zm00001d043536_P001 | Maize | nucleus | 31.37 | 38.55 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 34.64 | 38.55 |
| TraesCSU01G127300.1 | Wheat | nucleus | 34.64 | 38.55 |
| Os01t0733200-01 | Rice | nucleus | 31.37 | 38.4 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 33.01 | 38.11 |
| EER89919 | Sorghum | nucleus | 34.64 | 37.99 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 33.01 | 37.97 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 30.07 | 37.86 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 32.35 | 37.64 |
| KXG33312 | Sorghum | nucleus | 31.7 | 37.31 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 33.33 | 36.96 |
| Os02t0232000-01 | Rice | nucleus | 35.95 | 36.91 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 35.29 | 36.36 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 30.72 | 35.88 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 23.86 | 34.93 |
| GSMUA_Achr10P... | Banana | nucleus | 33.01 | 33.11 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 30.72 | 32.53 |
| CDY14893 | Canola | nucleus | 27.45 | 32.06 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 34.97 | 31.85 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 33.33 | 31.48 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 30.39 | 30.39 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 30.07 | 30.26 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 31.05 | 30.25 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 27.78 | 30.14 |
| Os01t0625300-01 | Rice | nucleus | 33.33 | 30.09 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 30.72 | 29.94 |
| Zm00001d044168_P001 | Maize | nucleus | 32.35 | 29.91 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 31.37 | 29.91 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 31.7 | 29.85 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 31.37 | 29.54 |
| CDY29054 | Canola | nucleus | 25.49 | 29.43 |
| CDY43158 | Canola | nucleus | 29.41 | 29.41 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 31.37 | 29.36 |
| CDX90626 | Canola | nucleus | 25.49 | 29.0 |
| CDX94887 | Canola | nucleus | 25.49 | 28.89 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 21.9 | 28.27 |
| CDX76693 | Canola | nucleus | 26.14 | 28.07 |
| CDY11470 | Canola | nucleus | 26.14 | 28.07 |
| CDX95313 | Canola | nucleus | 24.51 | 27.99 |
| CDX90627 | Canola | nucleus | 26.14 | 27.87 |
| CDY21503 | Canola | nucleus | 31.05 | 27.22 |
| EES01103 | Sorghum | nucleus | 31.37 | 26.3 |
| CDX94884 | Canola | nucleus | 24.51 | 26.13 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 30.39 | 25.62 |
| Zm00001d011406_P001 | Maize | nucleus | 32.35 | 25.58 |
| CDX70290 | Canola | nucleus | 29.74 | 25.07 |
| CDX83217 | Canola | nucleus | 30.39 | 24.93 |
| CDY13041 | Canola | nucleus | 24.84 | 24.76 |
| CDY10311 | Canola | nucleus | 31.37 | 24.74 |
| CDY10674 | Canola | nucleus | 31.37 | 24.68 |
| CDY34229 | Canola | nucleus | 30.07 | 24.27 |
| CDY46607 | Canola | nucleus | 28.43 | 23.45 |
| CDX92958 | Canola | nucleus | 26.14 | 23.26 |
| CDY46606 | Canola | nucleus | 29.09 | 23.24 |
| CDY10361 | Canola | nucleus | 30.07 | 22.94 |
| CDX78797 | Canola | nucleus | 32.03 | 22.79 |
| CDY60785 | Canola | nucleus | 32.03 | 22.43 |
| CDY23108 | Canola | nucleus | 24.84 | 22.35 |
| CDY16977 | Canola | nucleus | 32.03 | 22.22 |
| CDY28731 | Canola | nucleus | 31.05 | 21.79 |
| CDY09259 | Canola | nucleus | 25.49 | 21.55 |
| CDX76506 | Canola | nucleus | 25.49 | 21.31 |
| CDY58547 | Canola | nucleus | 31.37 | 21.15 |
| CDX85486 | Canola | nucleus | 30.39 | 21.04 |
| CDY38085 | Canola | nucleus | 30.07 | 20.96 |
| CDX74228 | Canola | nucleus | 31.05 | 20.88 |
| CDX92026 | Canola | nucleus | 30.39 | 20.76 |
| CDX93842 | Canola | nucleus | 32.68 | 20.53 |
| CDY01288 | Canola | nucleus | 32.68 | 20.33 |
| CDX99415 | Canola | nucleus | 25.49 | 20.31 |
| CDY69818 | Canola | nucleus | 25.82 | 20.26 |
| CDY01562 | Canola | nucleus | 25.82 | 20.1 |
| CDX69418 | Canola | nucleus | 31.05 | 19.51 |
| CDY01180 | Canola | nucleus | 29.09 | 18.66 |
| CDY12723 | Canola | nucleus | 28.43 | 18.32 |
| CDY44649 | Canola | nucleus | 24.51 | 15.79 |
| CDX78902 | Canola | nucleus | 25.49 | 15.09 |
| CDY43157 | Canola | cytosol | 1.96 | 6.67 |
| CDX84097 | Canola | nucleus | 4.58 | 5.2 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078DX80 | EnsemblPlants:CDX93024 | ProteinID:CDX93024 | ProteinID:CDX93024.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00154915001 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EE85AC | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
BnaA03g37460D
Coordinates
chrLK031874:+:764337..765257
Molecular Weight (calculated)
34928.3 Da
IEP (calculated)
7.082
GRAVY (calculated)
-0.716
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDKNNNTTS TNTNVIAPFV AKTYQMVNDP STDWLITWGP AHNSFIVADP LDFSQRILPA YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEHFLRGQKH
101: LLKNITRRKH ARGMMDVEDG EIVKEIERLR DEQRELELEI QRMNQRIEAT EKRPEQMMAF LYKVVDDPDL LPRMMLEKER LVSDKKKRRV TVKSEEGAEE
201: EERVFGVVSP SPSPPENSIG WVVPMQRQGT FGSYYNETGM VANSMRSTSS KSSSLTSTLS LPESVNGGCG SVQGETRDKK AATFGGVVES NPQTPPYPFS
301: LFRGGF
101: LLKNITRRKH ARGMMDVEDG EIVKEIERLR DEQRELELEI QRMNQRIEAT EKRPEQMMAF LYKVVDDPDL LPRMMLEKER LVSDKKKRRV TVKSEEGAEE
201: EERVFGVVSP SPSPPENSIG WVVPMQRQGT FGSYYNETGM VANSMRSTSS KSSSLTSTLS LPESVNGGCG SVQGETRDKK AATFGGVVES NPQTPPYPFS
301: LFRGGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.