Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G425200.1 | Wheat | nucleus | 89.72 | 83.22 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 89.01 | 82.03 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 90.78 | 81.53 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 76.6 | 74.74 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 85.11 | 73.85 |
| Os01t0625300-01 | Rice | nucleus | 67.38 | 56.05 |
| Zm00001d044168_P001 | Maize | nucleus | 64.54 | 54.98 |
| EES01103 | Sorghum | nucleus | 67.38 | 52.05 |
| Zm00001d011406_P001 | Maize | nucleus | 64.54 | 47.03 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 41.84 | 42.75 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 33.33 | 39.83 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 28.01 | 37.8 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 39.72 | 34.57 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 32.98 | 33.94 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 32.62 | 33.7 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 30.85 | 33.21 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 29.43 | 31.2 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 39.36 | 30.58 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 33.69 | 28.88 |
| KRH39283 | Soybean | nucleus | 32.27 | 28.44 |
| CDX93024 | Canola | nucleus | 30.14 | 27.78 |
| Bra015050.1-P | Field mustard | nucleus | 30.14 | 27.51 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 33.33 | 27.17 |
| CDX77420 | Canola | nucleus | 30.14 | 27.07 |
| CDY39545 | Canola | nucleus | 30.14 | 27.07 |
| CDY50608 | Canola | nucleus | 30.14 | 26.98 |
| Bra013253.1-P | Field mustard | nucleus | 26.6 | 26.69 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 31.21 | 25.81 |
| AT3G24520.1 | Thale cress | nucleus | 30.14 | 25.76 |
| CDY43158 | Canola | nucleus | 26.95 | 24.84 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 32.27 | 24.73 |
| Solyc12g007070.1.1 | Tomato | nucleus | 31.21 | 23.85 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 31.21 | 23.66 |
| PGSC0003DMT400001025 | Potato | nucleus | 30.85 | 23.64 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 29.08 | 22.91 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 30.85 | 21.91 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 31.91 | 21.79 |
| TraesCS4A01G062800.1 | Wheat | nucleus | 27.3 | 20.1 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 31.91 | 17.27 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 26.24 | 17.13 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 26.6 | 16.93 |
| TraesCS2A01G204500.1 | Wheat | nucleus | 29.79 | 16.83 |
| TraesCS6A01G098800.1 | Wheat | nucleus | 27.3 | 16.81 |
| CDY43157 | Canola | cytosol | 1.06 | 3.33 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS3A01G393100 | EnsemblPlants:TraesCS3A01G393100.1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:640879465..640880640
Molecular Weight (calculated)
31733.9 Da
IEP (calculated)
5.622
GRAVY (calculated)
-0.321
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLHKELAL GLIGELQTAP FVAKTYQMVS DPRTDALVRW GRDNNSFLVT DVAGFSQLLL PCFFKHGNFS SFIRQLNSYG FRKVHPDRWE FAHESFLRGQ
101: MYLLSRIEVE EEEDDEGREA LLEEVRRLRH EQTAIGEQLA QMARRLQATE RRSDRLMPLI ARLDEDPRAT SLHLLQQAAE KKLQRMHLPS RDFASFPIAP
201: PLHSAPSPLL ALGDTAMSGA RVWQWAEPMS PLKLTTFEQP SASSGVQQVP EFEAGGSGMG LTDSGTAVET PFPFCLLGQC FF
101: MYLLSRIEVE EEEDDEGREA LLEEVRRLRH EQTAIGEQLA QMARRLQATE RRSDRLMPLI ARLDEDPRAT SLHLLQQAAE KKLQRMHLPS RDFASFPIAP
201: PLHSAPSPLL ALGDTAMSGA RVWQWAEPMS PLKLTTFEQP SASSGVQQVP EFEAGGSGMG LTDSGTAVET PFPFCLLGQC FF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.