Factsheet for TraesCS5A01G524000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G548700.1	Wheat	nucleus	53.44	51.09
TraesCS7A01G355300.1	Wheat	nucleus	50.76	50.0
KXG29862	Sorghum	nucleus	50.0	49.06
Zm00001d016255_P001	Maize	nucleus	48.09	49.03
Os02t0232000-01	Rice	nucleus	52.67	46.31
TraesCS5A01G550700.1	Wheat	nucleus	48.09	46.15
GSMUA_Achr4P30990_001	Banana	nucleus	44.27	40.14
GSMUA_Achr10P...	Banana	nucleus	42.37	36.39
TraesCS3A01G280800.1	Wheat	nucleus	32.06	35.59
KRH39283	Soybean	nucleus	40.46	33.12
TraesCS3A01G393100.1	Wheat	nucleus	33.21	30.85
CDX93024	Canola	nucleus	35.88	30.72
Bra013253.1-P	Field mustard	nucleus	32.44	30.25
TraesCS3A01G393200.1	Wheat	nucleus	35.88	29.94
VIT_11s0016g03940.t01	Wine grape	nucleus	37.4	29.79
CDY50608	Canola	nucleus	35.5	29.52
Bra015050.1-P	Field mustard	nucleus	34.73	29.45
AT3G24520.1	Thale cress	nucleus	36.64	29.09
CDX77420	Canola	nucleus	34.73	28.98
CDY39545	Canola	nucleus	34.73	28.98
TraesCS3A01G229000.1	Wheat	nucleus	35.88	28.92
PGSC0003DMT400001025	Potato	nucleus	37.4	26.63
Solyc12g007070.1.1	Tomato	nucleus	37.4	26.56
TraesCS1A01G375600.2	Wheat	nucleus	35.88	25.54
TraesCS5A01G437900.1	Wheat	nucleus	32.82	24.86
CDY43158	Canola	nucleus	27.1	23.2
TraesCS7A01G360400.1	Wheat	nucleus	31.3	22.91
TraesCS4A01G027700.1	Wheat	nucleus	29.77	22.87
TraesCS3A01G405200.1	Wheat	nucleus	33.21	21.91
TraesCS2A01G089300.1	Wheat	nucleus	33.97	21.55
TraesCS5A01G383800.1	Wheat	nucleus	28.63	20.16
TraesCS4A01G062800.1	Wheat	nucleus	27.48	18.8
TraesCS6A01G098800.1	Wheat	nucleus	30.15	17.25
TraesCS2A01G204500.1	Wheat	nucleus	32.06	16.83
TraesCS3A01G289200.1	Wheat	nucleus	26.72	16.2
TraesCS4A01G322300.1	Wheat	nucleus	31.68	15.93
TraesCS1A01G350400.2	Wheat	nucleus	26.72	15.8
CDY43157	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
PANTHER:PTHR10015	PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS5A01G524000	EnsemblPlants:TraesCS5A01G524000.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:684697458..684698332

Molecular Weight (calculated)

29546.0 Da

IEP (calculated)

5.918

GRAVY (calculated)

-0.483

Length

262 amino acids

Sequence
(BLAST)

001: MAKEYSESGG LVGLMPFVAK TYSMVEDPAT DDVIAWGRGG NSFIVADLLV FSGTLLPAHF KHCKFSNFVR QLNTYGFQKV DPNRWEYAHV LFLRGHAHLL
101: HQIVRLTNNN SKRKPKDDDD HNNTMVATEV ILLKQEQKAI KDRLAAMSRQ VRETERRRKQ MLDVLLKVVR DPEVLRPLLG NNESEEKGAE VKRLRLQLLD
201: REGQVGSTNS MSVDGPLYDT TQDEVFVPET GIDFTGFYTG GGFVADGSGE DPSYAFPMDN DY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.