Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G358900.1 | Wheat | nucleus | 91.61 | 90.94 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 89.05 | 88.73 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 88.69 | 88.69 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 64.23 | 64.47 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 78.83 | 64.29 |
| Zm00001d016255_P001 | Maize | nucleus | 55.84 | 59.53 |
| KXG29862 | Sorghum | nucleus | 57.66 | 59.18 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 55.11 | 56.77 |
| Os02t0232000-01 | Rice | nucleus | 60.22 | 55.37 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 51.09 | 53.44 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 51.82 | 49.13 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 38.69 | 44.92 |
| GSMUA_Achr10P... | Banana | nucleus | 47.81 | 42.95 |
| Bra013253.1-P | Field mustard | nucleus | 36.86 | 35.94 |
| KRH39283 | Soybean | nucleus | 41.24 | 35.31 |
| CDX93024 | Canola | nucleus | 39.42 | 35.29 |
| Bra015050.1-P | Field mustard | nucleus | 38.32 | 33.98 |
| CDY50608 | Canola | nucleus | 39.05 | 33.97 |
| CDX77420 | Canola | nucleus | 38.32 | 33.44 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 38.32 | 33.44 |
| CDY39545 | Canola | nucleus | 38.32 | 33.44 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 33.94 | 32.98 |
| AT3G24520.1 | Thale cress | nucleus | 39.42 | 32.73 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 37.96 | 32.0 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 37.96 | 31.61 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 36.13 | 28.61 |
| CDY43158 | Canola | nucleus | 31.02 | 27.78 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 36.86 | 27.45 |
| Solyc12g007070.1.1 | Tomato | nucleus | 36.86 | 27.37 |
| PGSC0003DMT400001025 | Potato | nucleus | 36.13 | 26.9 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 33.21 | 26.69 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 34.67 | 26.54 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 32.85 | 24.19 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 34.31 | 23.68 |
| TraesCS4A01G062800.1 | Wheat | nucleus | 32.48 | 23.24 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 34.67 | 23.0 |
| TraesCS6A01G098800.1 | Wheat | nucleus | 33.58 | 20.09 |
| TraesCS2A01G204500.1 | Wheat | nucleus | 35.4 | 19.44 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 36.13 | 19.0 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 29.56 | 18.75 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 29.56 | 18.28 |
| CDY43157 | Canola | cytosol | 1.09 | 3.33 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5A01G548700 | EnsemblPlants:TraesCS5A01G548700.1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:702631793..702632617
Molecular Weight (calculated)
30358.1 Da
IEP (calculated)
6.955
GRAVY (calculated)
-0.456
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGMECSG SEGGGGMVAP FVAKTYAMVD DPATDAVVAW GPASNSFVVA DPFSFSRALL PAHFKHSNFS SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ
101: THLLTRIVRR RSGGKRGKED ADEEDEDISS KMLAMEVVRL KEEQRATEDR LATMWRRVQD AERRPKLMLA FLLKVVGDPD VLRRLVGNSG GGCGLFPGEG
201: AEAKRPRLLL DGEAQMGKKK MRVDGDGLLY DINRQEAFVR EPRVNFTGFY TGGDGFSEVP VDDPPYAFRM DGGY
101: THLLTRIVRR RSGGKRGKED ADEEDEDISS KMLAMEVVRL KEEQRATEDR LATMWRRVQD AERRPKLMLA FLLKVVGDPD VLRRLVGNSG GGCGLFPGEG
201: AEAKRPRLLL DGEAQMGKKK MRVDGDGLLY DINRQEAFVR EPRVNFTGFY TGGDGFSEVP VDDPPYAFRM DGGY
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.