Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G358900.1 | Wheat | nucleus | 90.18 | 89.86 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 88.73 | 89.05 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 86.91 | 87.23 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 68.36 | 82.1 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 68.36 | 81.39 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 74.91 | 76.87 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 70.91 | 71.43 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 80.73 | 66.07 |
| Zm00001d016255_P001 | Maize | nucleus | 56.0 | 59.92 |
| KXG29862 | Sorghum | nucleus | 56.0 | 57.68 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 54.91 | 57.41 |
| Os02t0232000-01 | Rice | nucleus | 60.0 | 55.37 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 50.55 | 48.1 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 37.82 | 45.81 |
| GSMUA_Achr10P... | Banana | nucleus | 48.73 | 43.93 |
| KRH39283 | Soybean | nucleus | 41.82 | 35.94 |
| Bra013253.1-P | Field mustard | nucleus | 36.0 | 35.23 |
| CDX93024 | Canola | nucleus | 38.55 | 34.64 |
| Bra015050.1-P | Field mustard | nucleus | 37.45 | 33.33 |
| CDY50608 | Canola | nucleus | 38.18 | 33.33 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 36.36 | 32.89 |
| CDX77420 | Canola | nucleus | 37.45 | 32.8 |
| CDY39545 | Canola | nucleus | 37.45 | 32.8 |
| AT3G24520.1 | Thale cress | nucleus | 38.55 | 32.12 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 37.09 | 31.38 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 37.45 | 31.31 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 37.82 | 29.46 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 37.45 | 29.18 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 36.36 | 27.93 |
| CDY43158 | Canola | nucleus | 30.55 | 27.45 |
| Solyc12g007070.1.1 | Tomato | nucleus | 36.36 | 27.1 |
| PGSC0003DMT400001025 | Potato | nucleus | 36.0 | 26.9 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 32.73 | 26.39 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 34.91 | 23.7 |
| TraesCS4B01G239700.1 | Wheat | nucleus | 32.36 | 23.18 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 32.73 | 20.79 |
| TraesCS2B01G232000.2 | Wheat | nucleus | 34.91 | 20.21 |
| TraesCS6B01G127000.1 | Wheat | nucleus | 32.73 | 19.78 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 35.64 | 18.53 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 29.45 | 18.37 |
| CDY43157 | Canola | cytosol | 1.09 | 3.33 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS4B01G383300 | EnsemblPlants:TraesCS4B01G383300.1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:-:662470217..662471044
Molecular Weight (calculated)
30190.9 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.415
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGGAGKGC SGSDGGMVAP FVAKTYAMVD DPATDAVVAW GPASNSFVVA DPFAFSRALL PAHFKHANFS SFVRQLNTYG FRKVDPDRWE FAHACFLRGQ
101: THLLPRIVRR RTGGGRRAKD SHDEEEDEDI SSKMLAMEVA RLKEEQRATK DRLAAMWRRV QDAERRPKLM LAFLLKVVGD PDVLRRLVGN SGGGGGLFPG
201: EGAEAKRPRL LLDGEAQVGK KMRIDGDGML CGINRQEAFV REPRVDFTGF YTGGDGFSEV PVDDPPYAFR VDTGY
101: THLLPRIVRR RTGGGRRAKD SHDEEEDEDI SSKMLAMEVA RLKEEQRATK DRLAAMWRRV QDAERRPKLM LAFLLKVVGD PDVLRRLVGN SGGGGGLFPG
201: EGAEAKRPRL LLDGEAQVGK KMRIDGDGML CGINRQEAFV REPRVDFTGF YTGGDGFSEV PVDDPPYAFR VDTGY
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.