Factsheet for TraesCS2B01G232000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G211400.1	Wheat	nucleus	91.79	87.37
TraesCS2A01G204500.1	Wheat	nucleus	91.16	86.77
Os02t0527300-01	Rice	nucleus	66.74	63.65
EES06898	Sorghum	nucleus	64.63	61.9
Zm00001d016674_P001	Maize	nucleus	64.21	60.04
TraesCS4B01G383200.1	Wheat	nucleus	17.89	36.8
TraesCS3B01G314600.1	Wheat	nucleus	17.26	36.12
TraesCS4B01G383300.1	Wheat	nucleus	20.21	34.91
TraesCS4B01G278100.1	Wheat	nucleus	24.84	34.6
TraesCS3B01G568200.1	Wheat	nucleus	16.63	34.5
TraesCS4B01G385800.1	Wheat	nucleus	19.58	34.07
TraesCS1B01G396000.1	Wheat	nucleus	25.05	33.24
TraesCS3B01G568300.1	Wheat	nucleus	18.95	32.85
TraesCS5B01G440700.1	Wheat	nucleus	24.21	32.58
TraesCS4B01G383400.1	Wheat	nucleus	18.32	32.46
TraesCS7B01G272500.1	Wheat	nucleus	17.89	32.32
TraesCS2B01G105100.1	Wheat	nucleus	25.68	30.12
TraesCS7B01G267300.1	Wheat	nucleus	21.68	29.18
TraesCS3B01G425200.1	Wheat	nucleus	17.89	27.96
TraesCS3B01G255600.1	Wheat	nucleus	18.32	26.77
TraesCS4B01G239700.1	Wheat	nucleus	20.42	25.26
TraesCS5B01G556200.1	Wheat	nucleus	27.79	24.95
TraesCS3B01G438900.1	Wheat	nucleus	22.11	24.25
TraesCS6B01G127000.1	Wheat	nucleus	21.89	22.86
TraesCS3B01G323800.1	Wheat	nucleus	20.21	21.77

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
PANTHER:PTHR10015	PANTHER:PTHR10015:SF164	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS2B01G232000	EnsemblPlants:TraesCS2B01G232000.2
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:229619821..229622393

Molecular Weight (calculated)

52083.3 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.461

Length

475 amino acids

Sequence
(BLAST)

001: MEHTHTGTNT TPAAVTASAS ASMDAALLLE PKLEMLQQHP AGHYAALDHH LIPPPPALVV PCEPPRPLEA LLQGPQLPPF LSKTYDLVSE PQLDGVISWG
101: PAGNSFVVWN PSAFARDVLP HNFKHNNFSS FVRQLNTYGF CKVHANRWEF AHEGFLRGSK HLLKTIVRRR SSPTQQSSPQ PGSSIFRKIQ SSSCGESTLD
201: PELRSLRREK NALLQEVARL KEEHNQTIEH MNALNQRLET AEDRQKQVVS FLAKLLQNPD FLRQLKMHRG RRDGIDSSRV KRKFLKHVPH GSRDSGDSSL
301: PRTAESTCSP AHPVAHDAIA DLQSFLLEDT DLSDGMLPGS FGLDGVEASE DIGALVQVFD QQDFGTGAEL LEIPPVSAAA HCQDSTFGRS KGKNVMCSGG
401: TDGTSSQANC LVSLPGNVCK LMDADGEQIW GADTFFQSSC SGTSQQAYVS DPYLMEIPDK PERFWELDSR FGGTG

Best Arabidopsis Sequence Match ( AT5G03720.1 )
(BLAST)

001: MSPKKDAVSK PTPISVPVSR RSDIPGSLYV DTDMGFSGSP LPMPLDILQG NPIPPFLSKT FDLVDDPTLD PVISWGLTGA SFVVWDPLEF ARIILPRNFK
101: HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGKKHLLK NIHRRRSPQS NQTCCSSTSQ SQGSPTEVGG EIEKLRKERR ALMEEMVELQ QQSRGTARHV
201: DTVNQRLKAA EQRQKQLLSF LAKLFQNRGF LERLKNFKGK EKGGALGLEK ARKKFIKHHQ QPQDSPTGGE VVKYEADDWE RLLMYDEETE NTKGLGGMTS
301: SDPKGKNLMY PSEEEMSKPD YLMSFPSPEG LIKQEETTWS MGFDTTIPSF SNTDAWGNTM DYNDVSEFGF AAETTSDGLP DVCWEQFAAG ITETGFNWPT
401: GDDDDNTPMN DP

Arabidopsis Description

HSFA3HSFA3 [Source:UniProtKB/TrEMBL;Acc:A0A178UHR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.