Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G568200.1 | Wheat | nucleus | 77.92 | 78.6 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 81.82 | 68.98 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 81.39 | 68.36 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 77.49 | 66.79 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 69.26 | 58.61 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 82.25 | 56.55 |
| Zm00001d016255_P001 | Maize | nucleus | 60.17 | 54.09 |
| KXG29862 | Sorghum | nucleus | 60.61 | 52.43 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 58.87 | 51.71 |
| Os02t0232000-01 | Rice | nucleus | 64.07 | 49.66 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 53.68 | 42.91 |
| GSMUA_Achr10P... | Banana | nucleus | 55.41 | 41.97 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 40.26 | 40.97 |
| Bra013253.1-P | Field mustard | nucleus | 42.86 | 35.23 |
| CDX93024 | Canola | nucleus | 42.42 | 32.03 |
| KRH39283 | Soybean | nucleus | 43.72 | 31.56 |
| Bra015050.1-P | Field mustard | nucleus | 41.99 | 31.39 |
| CDX77420 | Canola | nucleus | 42.42 | 31.21 |
| CDY39545 | Canola | nucleus | 42.42 | 31.21 |
| CDY50608 | Canola | nucleus | 41.99 | 30.79 |
| AT3G24520.1 | Thale cress | nucleus | 43.29 | 30.3 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 39.83 | 30.26 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 42.42 | 29.79 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 40.69 | 28.92 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 39.83 | 26.06 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 39.39 | 25.78 |
| CDY43158 | Canola | nucleus | 33.77 | 25.49 |
| Solyc12g007070.1.1 | Tomato | nucleus | 40.69 | 25.47 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 39.39 | 25.42 |
| PGSC0003DMT400001025 | Potato | nucleus | 39.83 | 25.0 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 35.93 | 24.34 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 39.83 | 22.72 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 38.1 | 20.32 |
| TraesCS4B01G239700.1 | Wheat | nucleus | 33.77 | 20.31 |
| TraesCS2B01G232000.2 | Wheat | nucleus | 36.8 | 17.89 |
| TraesCS6B01G127000.1 | Wheat | nucleus | 34.63 | 17.58 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 39.39 | 17.2 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 32.47 | 17.01 |
| CDY43157 | Canola | cytosol | 0.87 | 2.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS4B01G383200 | EnsemblPlants:TraesCS4B01G383200.1 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:-:662458182..662458877
Molecular Weight (calculated)
25959.4 Da
IEP (calculated)
4.701
GRAVY (calculated)
-0.474
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDEPETDAL VAWGPASNSF VVADPFAFSE MLLPAHFKHS NFSSFVRQLN TYGFRKVDPD RWEFAHASFL RGQTHLLPRI VRRRSTTRPS KDDNEGEDED
101: TSSTMLAMEV VRLKQEQRAT EDRLATMWRR VQDAERQPKL MLAFLVKVVR DPDVLRHLVG NSSTDAGLFP GEGAETKKPR LLLNGEVQMQ DAFVGEPAVD
201: FTGFYTGGDG FSDVPVDDDL PYAFPVNDGG Y
101: TSSTMLAMEV VRLKQEQRAT EDRLATMWRR VQDAERQPKL MLAFLVKVVR DPDVLRHLVG NSSTDAGLFP GEGAETKKPR LLLNGEVQMQ DAFVGEPAVD
201: FTGFYTGGDG FSDVPVDDDL PYAFPVNDGG Y
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.