Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G445100.1 | Wheat | nucleus | 94.05 | 95.4 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 93.2 | 95.09 |
| EER93298 | Sorghum | nucleus | 74.5 | 77.58 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 93.48 | 63.34 |
| Solyc06g053960.2.1 | Tomato | nucleus | 21.53 | 53.52 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 61.19 | 53.33 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 48.16 | 49.85 |
| AT3G51910.1 | Thale cress | nucleus | 36.83 | 47.79 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 48.44 | 47.77 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 48.44 | 47.37 |
| Bra012829.1-P | Field mustard | nucleus | 33.14 | 47.18 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 57.79 | 47.11 |
| CDX95313 | Canola | nucleus | 35.69 | 47.01 |
| KRH32059 | Soybean | nucleus | 44.76 | 46.33 |
| KRG95588 | Soybean | nucleus | 48.44 | 46.22 |
| KRH31657 | Soybean | nucleus | 43.91 | 45.99 |
| KRH67266 | Soybean | nucleus | 49.29 | 45.08 |
| PGSC0003DMT400049793 | Potato | nucleus | 45.89 | 44.51 |
| Bra012828.1-P | Field mustard | nucleus | 33.43 | 43.87 |
| CDX90626 | Canola | nucleus | 33.43 | 43.87 |
| CDY29054 | Canola | nucleus | 32.86 | 43.77 |
| KRG91367 | Soybean | nucleus | 45.33 | 43.72 |
| Solyc09g065660.2.1 | Tomato | nucleus | 45.89 | 43.55 |
| PGSC0003DMT400049795 | Potato | nucleus | 44.19 | 43.33 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 43.06 | 43.18 |
| Zm00001d034433_P003 | Maize | nucleus | 75.35 | 42.83 |
| CDX90627 | Canola | nucleus | 34.56 | 42.51 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.78 | 42.42 |
| KRH35452 | Soybean | nucleus | 43.91 | 42.35 |
| PGSC0003DMT400016511 | Potato | nucleus | 42.78 | 41.71 |
| PGSC0003DMT400041944 | Potato | nucleus | 40.23 | 41.28 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 25.78 | 40.09 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 26.06 | 39.83 |
| CDY14893 | Canola | nucleus | 29.46 | 39.69 |
| CDY11470 | Canola | nucleus | 32.01 | 39.65 |
| Bra007739.1-P | Field mustard | nucleus | 32.01 | 39.65 |
| CDY34229 | Canola | nucleus | 42.49 | 39.58 |
| Bra035993.1-P | Field mustard | nucleus | 31.16 | 39.15 |
| AT3G63350.1 | Thale cress | nucleus | 31.16 | 39.01 |
| AT5G43840.1 | Thale cress | nucleus | 31.16 | 39.01 |
| CDY10674 | Canola | nucleus | 42.78 | 38.82 |
| CDX76693 | Canola | nucleus | 31.16 | 38.6 |
| AT3G22830.1 | Thale cress | nucleus | 44.19 | 38.42 |
| CDY46606 | Canola | nucleus | 41.64 | 38.38 |
| CDX94887 | Canola | nucleus | 29.18 | 38.15 |
| Bra023800.1-P | Field mustard | nucleus | 42.78 | 37.94 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 29.46 | 37.82 |
| CDY46607 | Canola | nucleus | 39.66 | 37.74 |
| CDY10311 | Canola | nucleus | 41.36 | 37.63 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 24.36 | 37.55 |
| Bra033913.1-P | Field mustard | nucleus | 43.06 | 37.35 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 28.61 | 37.0 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 27.76 | 36.57 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 27.2 | 36.5 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 28.33 | 36.5 |
| Bra001885.1-P | Field mustard | nucleus | 39.66 | 35.81 |
| TraesCS7B01G267300.1 | Wheat | nucleus | 34.84 | 34.84 |
| CDX94884 | Canola | nucleus | 28.33 | 34.84 |
| TraesCS4B01G239700.1 | Wheat | nucleus | 35.69 | 32.81 |
| CDX92958 | Canola | nucleus | 31.73 | 32.56 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 27.76 | 32.24 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 28.33 | 30.77 |
| TraesCS5B01G556200.1 | Wheat | nucleus | 43.63 | 29.11 |
| TraesCS6B01G127000.1 | Wheat | nucleus | 34.28 | 26.59 |
| TraesCS2B01G232000.2 | Wheat | nucleus | 32.58 | 24.21 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 28.33 | 22.68 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF139 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5B01G440700 |
| EnsemblPlants:TraesCS5B01G440700.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:612679737..612682859
Molecular Weight (calculated)
39725.0 Da
IEP (calculated)
5.682
GRAVY (calculated)
-0.688
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHRMMMSPV KVEGRRCPDP DPAAAAGGGA PRPMDGLGDA GPTPFLAKTY DMVDDPATDA VVSWTATSNS FVVWDPHLFA TLLLPRYFKH SNFSSFVRQL
101: NTYGFRKVDP DRWEFANEGF LRGQRHLLRN IKRRKPTHGS QNQQSLGSYL EVGNFGHDVE IDHLKRDKQL LMAEVVKLRQ EQQNTRSDLQ AMEKRLQGTE
201: QKQQQMMSFL ARVMQNPMFI RQLISQSEMR KELEDAISNK RRRRIDQGPE AVDGMGTGST LEQGSQVMFE KQEPVDSLVN GVISDLESSS VDTKGAEVQQ
301: SVASSRSEQL RGRPSGELND DFWEDLLHEG GLGEEASNLV VPDDMNLLAQ KMD
101: NTYGFRKVDP DRWEFANEGF LRGQRHLLRN IKRRKPTHGS QNQQSLGSYL EVGNFGHDVE IDHLKRDKQL LMAEVVKLRQ EQQNTRSDLQ AMEKRLQGTE
201: QKQQQMMSFL ARVMQNPMFI RQLISQSEMR KELEDAISNK RRRRIDQGPE AVDGMGTGST LEQGSQVMFE KQEPVDSLVN GVISDLESSS VDTKGAEVQQ
301: SVASSRSEQL RGRPSGELND DFWEDLLHEG GLGEEASNLV VPDDMNLLAQ KMD
001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SR
Arabidopsis Description
HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.