Factsheet for Bra001885.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92958	Canola	nucleus	87.98	100.0
Bra033913.1-P	Field mustard	nucleus	79.03	75.92
Bra023800.1-P	Field mustard	nucleus	77.24	75.88
AT3G22830.1	Thale cress	nucleus	75.96	73.15
Solyc06g053960.2.1	Tomato	nucleus	23.79	65.49
KRG91367	Soybean	nucleus	50.13	53.55
KRH31657	Soybean	nucleus	45.52	52.82
Solyc09g082670.2.1	Tomato	nucleus	47.31	51.97
GSMUA_Achr8P20520_001	Banana	nucleus	37.85	51.03
PGSC0003DMT400016511	Potato	nucleus	46.8	50.55
PGSC0003DMT400041944	Potato	nucleus	43.73	49.71
Bra012829.1-P	Field mustard	nucleus	31.46	49.6
KRH35452	Soybean	nucleus	46.29	49.45
Bra012828.1-P	Field mustard	nucleus	32.74	47.58
GSMUA_Achr5P03000_001	Banana	nucleus	40.41	47.31
Os10t0419300-00	Rice	nucleus	43.22	47.21
Zm00001d032923_P002	Maize	nucleus	42.46	46.5
EER94213	Sorghum	nucleus	42.46	45.86
GSMUA_Achr6P24430_001	Banana	nucleus	36.06	45.78
VIT_05s0020g04090.t01	Wine grape	nucleus	40.92	45.45
HORVU1Hr1G083420.2	Barley	nucleus	42.97	45.16
GSMUA_Achr1P27200_001	Banana	nucleus	38.36	45.05
TraesCS4D01G276500.1	Wheat	nucleus	38.87	44.57
TraesCS1A01G375600.2	Wheat	nucleus	41.94	44.57
TraesCS1B01G396000.1	Wheat	nucleus	40.66	44.41
TraesCS4B01G278100.1	Wheat	nucleus	38.36	43.99
TraesCS1D01G382900.1	Wheat	nucleus	40.92	43.96
EER93298	Sorghum	nucleus	37.85	43.66
HORVU4Hr1G073650.2	Barley	nucleus	38.36	43.6
TraesCS4A01G027700.1	Wheat	nucleus	37.6	43.11
Zm00001d018941_P001	Maize	nucleus	40.92	42.67
EER95940	Sorghum	nucleus	40.41	42.47
Os03t0161900-02	Rice	nucleus	40.66	41.95
Bra035993.1-P	Field mustard	nucleus	29.92	41.64
Bra007739.1-P	Field mustard	nucleus	30.18	41.4
Os07t0178600-01	Rice	nucleus	38.87	40.86
TraesCS5D01G445100.1	Wheat	nucleus	36.32	40.8
TraesCS5A01G437900.1	Wheat	nucleus	36.06	40.75
EER95463	Sorghum	nucleus	39.9	39.9
Zm00001d027757_P001	Maize	nucleus	39.13	39.84
TraesCS5B01G440700.1	Wheat	nucleus	35.81	39.66
Bra000557.1-P	Field mustard	nucleus	35.04	39.37
HORVU5Hr1G094380.1	Barley	nucleus	37.34	39.35
TraesCS5D01G393200.1	Wheat	nucleus	37.6	38.99
TraesCS5A01G383800.1	Wheat	nucleus	36.83	38.71
TraesCS2D01G087400.1	Wheat	nucleus	40.41	38.35
HORVU2Hr1G014590.1	Barley	nucleus	40.92	38.28
TraesCS2B01G105100.1	Wheat	nucleus	39.64	38.27
TraesCS2A01G089300.1	Wheat	nucleus	40.41	38.26
EER90889	Sorghum	nucleus	35.55	37.47
TraesCS3A01G405200.1	Wheat	nucleus	37.85	37.28
Zm00001d033987_P001	Maize	nucleus	34.78	36.66
TraesCS3B01G438900.1	Wheat	nucleus	37.34	33.72
Bra040179.1-P	Field mustard	nucleus	36.83	33.33
Bra015050.1-P	Field mustard	nucleus	23.79	30.1
Bra023584.1-P	Field mustard	nucleus	33.5	29.64
Bra013253.1-P	Field mustard	nucleus	21.23	29.54
Bra021381.1-P	Field mustard	nucleus	34.02	29.3
Bra032023.1-P	Field mustard	nucleus	33.25	28.51
Bra001071.1-P	Field mustard	nucleus	32.74	28.26
Bra023258.1-P	Field mustard	nucleus	34.53	27.72
Bra017595.1-P	Field mustard	nucleus	24.04	27.65
HORVU5Hr1G105770.2	Barley	nucleus	36.83	27.64
Bra012571.1-P	Field mustard	nucleus	26.85	26.92
Bra008593.1-P	Field mustard	nucleus	32.99	26.71
Bra009515.1-P	Field mustard	nucleus	24.55	26.45
Bra020988.1-P	Field mustard	nucleus	23.27	26.07
Bra035507.1-P	Field mustard	nucleus	27.37	25.06
Zm00001d034433_P003	Maize	nucleus	37.34	23.51
Bra032752.1-P	Field mustard	nucleus	25.83	21.17
Bra013358.1-P	Field mustard	nucleus	24.81	18.76

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra001885	EnsemblPlants:Bra001885.1	EnsemblPlants:Bra001885.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M4CCF5	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF139	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002540731	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT3G22830 (E=3e-136) AT-HSFA6B, HSFA6B | AT-HSFA6B; DNA binding / transcription factor

Coordinates

chrA03:+:19137242..19139063

Molecular Weight (calculated)

44570.0 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.840

Length

391 amino acids

Sequence
(BLAST)

001: MDPSYTCIKE EFPTGINDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP FLTKTYDLVE DSRTNDVVSW SQDKNSFIVW DPQAFSMTLL
101: PRSFKHNNFS SFVRQLNTYG FRKVNPDRWE FANKGFLRGQ KHLLKTITRR KTNNNNQMQP PESSSQQQSL DNCCIEVGRY GLEGEMDSLR RDKQVLMMEL
201: VKLRKEQQST KMYLTLTEAK LKKTESKQHQ MMSFLARAMQ NPDFLQQLVE HKDKSKDMEE AIRKKRQRTI DQGTSDVVNV EDCDVNVGGG SSSRFVDMKQ
301: DIYGDMPEFA MSELDGLAMH IEGLGGQFTG EEVLDVDKRE QEGFQNENNE SYGEDFLEGL FKEDQDIDFE RDGENVDVLI EQLGYLGSSS H

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.