Factsheet for Bra008593.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69418	Canola	nucleus	98.96	98.15
CDY16977	Canola	nucleus	82.61	90.48
Bra023584.1-P	Field mustard	nucleus	65.84	71.95
AT5G16820.2	Thale cress	nucleus	68.32	68.61
Bra032023.1-P	Field mustard	nucleus	54.04	57.24
Bra021381.1-P	Field mustard	nucleus	52.38	55.73
Bra001071.1-P	Field mustard	nucleus	51.14	54.53
GSMUA_Achr4P04500_001	Banana	nucleus	43.48	47.84
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	48.65	45.9
KRH77766	Soybean	nucleus	41.61	43.32
GSMUA_Achr3P27600_001	Banana	nucleus	37.68	42.72
GSMUA_Achr4P17040_001	Banana	nucleus	43.06	42.71
PGSC0003DMT400008199	Potato	nucleus	43.48	42.68
Bra040179.1-P	Field mustard	nucleus	37.68	42.13
Solyc03g097120.2.1	Tomato	nucleus	42.65	41.96
KRH27709	Soybean	nucleus	39.96	41.59
Os03t0854500-01	Rice	nucleus	42.03	40.12
Bra012829.1-P	Field mustard	nucleus	20.5	39.92
PGSC0003DMT400069550	Potato	nucleus	39.34	39.5
TraesCS5D01G553300.1	Wheat	nucleus	42.65	39.46
TraesCS4A01G322300.1	Wheat	nucleus	42.24	39.16
Solyc06g072750.2.1	Tomato	nucleus	38.92	39.0
TraesCS5B01G556200.1	Wheat	nucleus	42.65	38.94
EER93074	Sorghum	nucleus	42.03	38.52
Bra012828.1-P	Field mustard	nucleus	21.33	38.29
Bra023258.1-P	Field mustard	nucleus	38.1	37.78
Zm00001d034886_P001	Maize	nucleus	40.79	37.38
Bra035993.1-P	Field mustard	nucleus	21.53	37.01
Bra007739.1-P	Field mustard	nucleus	21.12	35.79
HORVU5Hr1G123770.1	Barley	nucleus	42.44	35.71
Bra000557.1-P	Field mustard	nucleus	25.67	35.63
Zm00001d012823_P001	Maize	nucleus	40.79	35.43
Bra035507.1-P	Field mustard	nucleus	31.06	35.13
Bra017595.1-P	Field mustard	nucleus	23.4	33.24
Bra001885.1-P	Field mustard	nucleus	26.71	32.99
Bra033913.1-P	Field mustard	nucleus	27.74	32.92
Bra023800.1-P	Field mustard	nucleus	27.12	32.91
Bra015050.1-P	Field mustard	nucleus	19.67	30.74
Bra020988.1-P	Field mustard	nucleus	22.15	30.66
Bra013253.1-P	Field mustard	nucleus	17.81	30.61
Bra012571.1-P	Field mustard	nucleus	24.64	30.51
Bra009515.1-P	Field mustard	nucleus	22.57	30.03
Bra032752.1-P	Field mustard	nucleus	24.43	24.74
Bra013358.1-P	Field mustard	nucleus	23.4	21.86

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EnsemblPlantsGene:Bra008593	EnsemblPlants:Bra008593.1	EnsemblPlants:Bra008593.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	UniProt:M4CWJ6	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI00025446B9	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT5G16820 (E=1e-150) HSF3, HSFA1B, ATHSFA1B | HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor

Coordinates

chrA10:-:12960520..12962744

Molecular Weight (calculated)

53240.2 Da

IEP (calculated)

4.688

GRAVY (calculated)

-0.572

Length

483 amino acids

Sequence
(BLAST)

001: MEPVLEPAPY VNSNPLPIPP PLNSVPPFLS KTYDMVDDPS TNEVVSWSSG NNSFVVWDVP EFSKVFLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRDQKQL LKGITRRKSS HVQQQTQVQN SSLAPCVEVG KFGIAEEVER LKRDKNVLMH QQQATENQLK DAVQKVQAME QRQQQMMSFL AKAVQSPGFL
201: NQLVAQQSND GNRQIQGSSN KKRRLPGEEA NDVDRQIVKY QPSINEAAQT MLRQFLNMSS SPESESVPNN PGSFSPSSLN SSNTVSGVTL PEVSPDSAHS
301: AAMNQVPDAG LAHHPQAGLV HPNLGPSPAA ATWSPESECK TGNGECLDPI MAALGGSLEM EGDAVSPEGE GEVKELLVPQ LPGVQDPFWE QFFADEAPVS
401: GETDETISGS VETMEQELRE WTRDQQQVNH ITEQTGFLSS ETHGGKNEKH VLCIIVLPFV FHRCIFFRGG CEGDMNGGGG DIS

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.