Factsheet for Bra020988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76506	Canola	nucleus	97.71	93.17
Bra012571.1-P	Field mustard	nucleus	84.81	75.9
AT4G18880.1	Thale cress	nucleus	82.52	71.82
Bra017595.1-P	Field mustard	nucleus	52.72	54.12
Bra013358.1-P	Field mustard	nucleus	74.79	50.48
KRH11063	Soybean	nucleus	53.87	47.96
KRH21206	Soybean	nucleus	53.58	47.7
KRH42919	Soybean	nucleus	53.87	46.77
KRH59030	Soybean	nucleus	52.72	45.77
VIT_10s0003g01770.t01	Wine grape	nucleus	45.27	45.53
Solyc02g072000.2.1	Tomato	nucleus	49.86	42.65
GSMUA_Achr8P27750_001	Banana	nucleus	26.93	42.53
Solyc03g006000.2.1	Tomato	nucleus	48.42	42.14
PGSC0003DMT400071487	Potato	nucleus	48.14	41.69
EES01479	Sorghum	nucleus	43.27	34.79
Os01t0749300-02	Rice	nucleus	43.84	34.77
Zm00001d012749_P001	Maize	nucleus	42.98	34.64
TraesCS3A01G289200.1	Wheat	nucleus	42.12	34.03
HORVU3Hr1G071550.3	Barley	nucleus	42.12	34.03
TraesCS3B01G323800.1	Wheat	nucleus	42.12	33.33
GSMUA_Achr3P15640_001	Banana	nucleus	42.12	32.45
GSMUA_Achr6P31750_001	Banana	nucleus	44.7	32.1
HORVU1Hr1G081300.1	Barley	nucleus	39.54	32.02
TraesCS3D01G289000.1	Wheat	nucleus	38.11	31.97
Bra012828.1-P	Field mustard	nucleus	24.07	31.23
Bra012829.1-P	Field mustard	nucleus	21.78	30.65
TraesCS1A01G350400.2	Wheat	nucleus	38.11	30.02
Zm00001d010812_P001	Maize	nucleus	38.4	29.84
Os05t0530400-01	Rice	nucleus	38.68	29.41
EES18551	Sorghum	nucleus	38.11	27.94
Bra035993.1-P	Field mustard	nucleus	22.35	27.76
Zm00001d038746_P001	Maize	nucleus	36.68	27.29
Bra007739.1-P	Field mustard	nucleus	22.06	27.02
Bra013253.1-P	Field mustard	nucleus	20.34	25.27
Bra032752.1-P	Field mustard	nucleus	34.1	24.95
Bra023584.1-P	Field mustard	nucleus	31.52	24.89
Bra001071.1-P	Field mustard	nucleus	32.09	24.72
Bra032023.1-P	Field mustard	nucleus	32.09	24.56
Bra040179.1-P	Field mustard	nucleus	30.09	24.31
Bra000557.1-P	Field mustard	nucleus	24.07	24.14
Bra023800.1-P	Field mustard	nucleus	27.51	24.12
Bra021381.1-P	Field mustard	nucleus	31.23	24.01
Bra033913.1-P	Field mustard	nucleus	27.79	23.83
Bra009515.1-P	Field mustard	nucleus	24.64	23.69
Bra001885.1-P	Field mustard	nucleus	26.07	23.27
Bra015050.1-P	Field mustard	nucleus	20.06	22.65
Bra008593.1-P	Field mustard	nucleus	30.66	22.15
Bra023258.1-P	Field mustard	nucleus	28.08	20.12
Bra035507.1-P	Field mustard	nucleus	18.62	15.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra020988	EnsemblPlants:Bra020988.1	EnsemblPlants:Bra020988.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M4DWU2	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154
SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002545663	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

AT4G18880 (E=5e-065) AT-HSFA4A, HSF A4A | AT-HSFA4A; DNA binding / transcription factor

Coordinates

chrA08:-:10737661..10738799

Molecular Weight (calculated)

40053.6 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.929

Length

349 amino acids

Sequence
(BLAST)

001: MVDDSSSDSI VSWSPQSNKS FIVWNPPEFS RDLLPKFFKH NNFASFIRQL NTYGFRKADP EQWEFANDDF VRGQPHLMKN IHRRKPVHSH SSPSLQPHPL
101: TDSERQRMND QIERLTKEKE VLLEELHKQE KEREMFQQQV KELKDQLQHM EKRQKTMASF VSQVLEKPEL AFNLSPCLQE TNERKRRFPR IGLEGSTSPS
201: SQARELQVEQ LESSIAVWEN LVSEDSSESL GQETRSMMTL DVDESSTCPE SPPLPCIQLS IDTCPTSPRT IDMNSEPDAS KEQNTVAPSP PLSAAGGNDV
301: FWQQLLTENP GSTGQKEVQS ERKDDKAEKC WWDSRNVNTL TEQLGHLTS

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.