Factsheet for VIT_10s0003g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13041	Canola	nucleus	46.97	53.09
Bra017595.1-P	Field mustard	nucleus	51.3	52.35
Solyc02g072000.2.1	Tomato	nucleus	61.38	52.21
CDY23108	Canola	nucleus	51.01	52.06
KRH42919	Soybean	nucleus	60.23	51.99
KRH59030	Soybean	nucleus	59.08	50.99
AT5G45710.3	Thale cress	nucleus	49.86	50.14
VIT_12s0028g01410.t01	Wine grape	nucleus	53.31	50.14
KRH11063	Soybean	nucleus	56.2	49.74
Solyc03g006000.2.1	Tomato	nucleus	57.35	49.63
PGSC0003DMT400071487	Potato	nucleus	57.35	49.38
GSMUA_Achr8P27750_001	Banana	nucleus	31.12	48.87
KRH21206	Soybean	nucleus	55.04	48.72
AT4G18880.1	Thale cress	nucleus	56.2	48.63
CDY09259	Canola	nucleus	50.14	48.07
CDY01562	Canola	nucleus	53.89	47.58
Bra012571.1-P	Field mustard	nucleus	53.31	47.44
CDX76506	Canola	nucleus	49.86	47.27
CDY69818	Canola	nucleus	53.03	47.18
CDX99415	Canola	nucleus	52.16	47.14
Bra020988.1-P	Field mustard	nucleus	45.53	45.27
GSMUA_Achr3P15640_001	Banana	nucleus	48.41	37.09
EES01479	Sorghum	nucleus	44.96	35.94
GSMUA_Achr6P31750_001	Banana	nucleus	49.28	35.19
Zm00001d012749_P001	Maize	nucleus	43.8	35.1
HORVU1Hr1G081300.1	Barley	nucleus	43.52	35.03
Os01t0749300-02	Rice	nucleus	44.38	35.0
HORVU3Hr1G071550.3	Barley	nucleus	43.52	34.95
TraesCS3A01G289200.1	Wheat	nucleus	43.52	34.95
TraesCS3B01G323800.1	Wheat	nucleus	43.8	34.47
TraesCS1A01G350400.2	Wheat	nucleus	43.8	34.31
Bra013358.1-P	Field mustard	nucleus	51.01	34.24
CDX78902	Canola	nucleus	51.01	34.24
Os05t0530400-01	Rice	nucleus	44.96	33.99
TraesCS3D01G289000.1	Wheat	nucleus	40.63	33.89
Zm00001d010812_P001	Maize	nucleus	43.8	33.85
EES18551	Sorghum	nucleus	44.09	32.14
Zm00001d038746_P001	Maize	nucleus	42.36	31.34
VIT_00s0179g00150.t01	Wine grape	nucleus	32.56	31.3
VIT_05s0020g04090.t01	Wine grape	nucleus	29.39	28.98
VIT_04s0008g01110.t01	Wine grape	nucleus	32.28	28.87
VIT_02s0012g01810.t01	Wine grape	nucleus	38.33	26.81
VIT_11s0016g03940.t01	Wine grape	nucleus	25.36	26.75
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	36.02	24.41
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	25.36	20.0
VIT_08s0007g03900.t01	Wine grape	nucleus	30.26	19.77

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ProteinID:CCB55711	ProteinID:CCB55711.1	ncoils:Coil	UniProt:F6HMC3
EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI000210825F	ArrayExpress:VIT_10s0003g01770	EnsemblPlantsGene:VIT_10s0003g01770
EnsemblPlants:VIT_10s0003g01770.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:3230647..3233670

Molecular Weight (calculated)

40252.7 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.895

Length

347 amino acids

Sequence
(BLAST)

001: MDESPGSSNS PPPFLTKTYE MVDDPTTDSI VSWSQTNKSF IVWNPEDFSR DLLPRFFKHN NFSSFIRQLN TYGFRKIDSE QWAFANEDFI RGQPHLLRNI
101: HRRKPVHSHS IQNQKGQGTS CPLSESDREG YRADIERLKH DKGALLLELQ RHKEDRQGLE LQMQHLKDRL QHMEQRQQTV ISYLARMLQK PGLALSFLPS
201: METHNRKRRL LTSNCFYDES DVEENRIATS HTVNTEKLDA TSVLELVEFL ESSLSSWEDI LDEFRPTSEQ VVGAASPVPT GVNDVFWEQF FTENPDSSAE
301: EVQLERKDDE SRKNEGKHGD HGRFWWNARS ANKLADQMGQ LTPAERT

Best Arabidopsis Sequence Match ( AT5G45710.1 )
(BLAST)

001: MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS

Arabidopsis Description

HSFA4CRHA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.