Factsheet for VIT_08s0007g03900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20029	Soybean	nucleus	43.5	50.88
KRH32651	Soybean	nucleus	43.88	50.65
PGSC0003DMT400006917	Potato	nucleus	46.14	49.3
KRH67848	Soybean	nucleus	38.98	48.94
Solyc09g009100.2.1	Tomato	nucleus	46.52	48.53
Bra009515.1-P	Field mustard	nucleus	33.15	48.48
CDX70290	Canola	nucleus	33.15	48.48
CDY10361	Canola	nucleus	34.46	45.64
AT5G03720.1	Thale cress	nucleus	35.22	45.39
VIT_00s0179g00150.t01	Wine grape	nucleus	24.48	36.01
VIT_05s0020g04090.t01	Wine grape	nucleus	22.6	34.09
GSMUA_Achr5P15900_001	Banana	nucleus	34.84	33.82
VIT_10s0003g01770.t01	Wine grape	nucleus	19.77	30.26
VIT_04s0008g01110.t01	Wine grape	nucleus	21.28	29.12
VIT_12s0028g01410.t01	Wine grape	nucleus	19.96	28.73
VIT_02s0012g01810.t01	Wine grape	nucleus	25.99	27.82
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	26.18	27.15
VIT_11s0016g03940.t01	Wine grape	nucleus	16.38	26.44
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	12.81	15.45

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100245950	wikigene:100245950	MapMan:15.5.13	ProteinID:CCB55400	ProteinID:CCB55400.1
ncoils:Coil	UniProt:F6HKH8	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009408	GO:GO:0009628	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EntrezGene:LOC100245950	wikigene:LOC100245950	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF164	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI00015C92B1	ArrayExpress:VIT_08s0007g03900	EnsemblPlantsGene:VIT_08s0007g03900	EnsemblPlants:VIT_08s0007g03900.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002277338	RefSeq:XP_002277338.2	RefSeq:XP_010654039.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:17877295..17880217

Molecular Weight (calculated)

58813.3 Da

IEP (calculated)

4.663

GRAVY (calculated)

-0.543

Length

531 amino acids

Sequence
(BLAST)

001: MNPRDNPYLD RKESPPPPYQ SEAPAAEAVQ PKTEPFSVGS QPFPSGSPLL QIRPISSLEP PFSGEPIVTV GVAAEAEAEA EEIGAPQPLD CLQDNPIPPF
101: LSKTFDIVDD VLLDPIVSWG PTGESFVVWD PVEFSRLVLP RNFKHNNFSS FVRQLNTYGF RKIDSDKWEF ANEGFMRGKR HLLKNIRRRK SPQSQHTGSY
201: AGPSSEIAMS GLESEVERLR KQKSLLMQEV IELQQQHSGT IHQMEVVNER IQAAEKRQKK MVSFLAKLLQ NPEFLARLLP KDDQKDIGVP RMMRKFVKHQ
301: KLEPGKSDSS MGGQIVKYRP GSENLITSSL FPPSNPDSCE QFPNDCLQVI AGKLDLGMES VPFGTRKVSS DELAAVAHKL IEAPEQVREE TASLGPVGLV
401: FKGKNLVSSQ PEGSTNYNLS FIDDSTKEKA FPEFLSPGID GIIKQADIWS MGFDDSADMT SSCGELWGNV TNYDVPDLGL TGGISDIWDL GSLQAAEGLG
501: IDKWPSDEST FNEPENQADQ PKDYTSKNTY P

Best Arabidopsis Sequence Match ( AT5G03720.1 )
(BLAST)

001: MSPKKDAVSK PTPISVPVSR RSDIPGSLYV DTDMGFSGSP LPMPLDILQG NPIPPFLSKT FDLVDDPTLD PVISWGLTGA SFVVWDPLEF ARIILPRNFK
101: HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGKKHLLK NIHRRRSPQS NQTCCSSTSQ SQGSPTEVGG EIEKLRKERR ALMEEMVELQ QQSRGTARHV
201: DTVNQRLKAA EQRQKQLLSF LAKLFQNRGF LERLKNFKGK EKGGALGLEK ARKKFIKHHQ QPQDSPTGGE VVKYEADDWE RLLMYDEETE NTKGLGGMTS
301: SDPKGKNLMY PSEEEMSKPD YLMSFPSPEG LIKQEETTWS MGFDTTIPSF SNTDAWGNTM DYNDVSEFGF AAETTSDGLP DVCWEQFAAG ITETGFNWPT
401: GDDDDNTPMN DP

Arabidopsis Description

HSFA3HSFA3 [Source:UniProtKB/TrEMBL;Acc:A0A178UHR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.