Factsheet for VIT_12s0028g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01770.t01	Wine grape	nucleus	50.14	53.31
GSMUA_Achr8P27750_001	Banana	nucleus	31.44	52.49
Solyc07g055710.2.1	Tomato	nucleus	48.24	45.88
PGSC0003DMT400044683	Potato	nucleus	49.59	44.42
Os01t0749300-02	Rice	nucleus	51.49	43.18
EES01479	Sorghum	nucleus	50.41	42.86
Zm00001d012749_P001	Maize	nucleus	49.86	42.49
GSMUA_Achr3P15640_001	Banana	nucleus	50.68	41.28
TraesCS3A01G289200.1	Wheat	nucleus	47.43	40.51
HORVU3Hr1G071550.3	Barley	nucleus	46.61	39.81
TraesCS3D01G289000.1	Wheat	nucleus	44.44	39.42
TraesCS3B01G323800.1	Wheat	nucleus	46.88	39.23
GSMUA_Achr6P31750_001	Banana	nucleus	51.49	39.09
Os05t0530400-01	Rice	nucleus	43.63	35.08
HORVU1Hr1G081300.1	Barley	nucleus	40.65	34.8
TraesCS1A01G350400.2	Wheat	nucleus	41.19	34.31
Zm00001d010812_P001	Maize	nucleus	41.73	34.3
VIT_00s0179g00150.t01	Wine grape	nucleus	33.33	34.07
EES18551	Sorghum	nucleus	43.09	33.4
VIT_05s0020g04090.t01	Wine grape	nucleus	30.35	31.82
Zm00001d038746_P001	Maize	nucleus	40.38	31.77
VIT_11s0016g03940.t01	Wine grape	nucleus	26.29	29.48
VIT_04s0008g01110.t01	Wine grape	nucleus	30.35	28.87
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	39.57	28.52
VIT_02s0012g01810.t01	Wine grape	nucleus	37.13	27.62
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	26.56	22.27
VIT_08s0007g03900.t01	Wine grape	nucleus	28.73	19.96

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ProteinID:CCB47419	ProteinID:CCB47419.1	ncoils:Coil	UniProt:F6H551
EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF154
SMART:SM00415	SUPFAM:SSF46785	TIGR:TC70154	UniParc:UPI0002109819	ArrayExpress:VIT_12s0028g01410	EnsemblPlantsGene:VIT_12s0028g01410
EnsemblPlants:VIT_12s0028g01410.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

No Description!

Coordinates

chr12:+:2054800..2057799

Molecular Weight (calculated)

42172.0 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.807

Length

369 amino acids

Sequence
(BLAST)

001: MEASQSTSSN SPPPFLTKTY EMVDDPITDS IVSWSQAGHS FVVWNPPEFA KDLLPKYFKH NNFSSFVRQL NTYGFRKADP EQWEFANEEF IRGQRHLLKN
101: IHRRKPIHSH STQNQVGSAP LPESEKQEFE AEIERLKHDK GALLSELQRY KQENQFFEFQ TQSLGKRVFN MELRQRKMMA YLAQVLQKPG FTSSLMAQSE
201: IHNKKRRLLM PNYLFNEANN VEMIESLESS LNFWENFLYG IGQGSADLAR ATNHADSPAI SSIYLNIDGC PKSLRIDVNS EPTNASEVEA SKECEGGTTA
301: AGANDVFWAQ FLTETPGSSD AQEVQSERRD AYGGKGDSKP DDHRKYWWDT NNLDHLTKKM GHLTSSERT

Best Arabidopsis Sequence Match ( AT5G45710.1 )
(BLAST)

001: MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS

Arabidopsis Description

HSFA4CRHA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.