Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044683 | Potato | nucleus | 88.14 | 83.01 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 27.84 | 48.87 |
| VIT_12s0028g01410.t01 | Wine grape | nucleus | 45.88 | 48.24 |
| Solyc06g053960.2.1 | Tomato | nucleus | 17.53 | 47.89 |
| Solyc03g006000.2.1 | Tomato | nucleus | 42.01 | 40.65 |
| Solyc02g072000.2.1 | Tomato | nucleus | 41.49 | 39.46 |
| EES01479 | Sorghum | nucleus | 42.53 | 38.02 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 41.75 | 37.5 |
| Os01t0749300-02 | Rice | nucleus | 42.53 | 37.5 |
| Zm00001d012749_P001 | Maize | nucleus | 41.24 | 36.95 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 40.46 | 36.34 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 40.46 | 35.6 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 40.98 | 35.1 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 37.63 | 35.1 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 43.04 | 34.36 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 38.14 | 34.34 |
| Zm00001d010812_P001 | Maize | nucleus | 39.43 | 34.08 |
| EES18551 | Sorghum | nucleus | 39.95 | 32.56 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 36.86 | 32.28 |
| Os05t0530400-01 | Rice | nucleus | 37.63 | 31.81 |
| Zm00001d038746_P001 | Maize | nucleus | 36.34 | 30.06 |
| Solyc09g082670.2.1 | Tomato | nucleus | 27.58 | 30.06 |
| Solyc12g098520.1.1 | Tomato | nucleus | 34.79 | 28.24 |
| Solyc09g065660.2.1 | Tomato | nucleus | 26.8 | 27.96 |
| Solyc07g040680.2.1 | Tomato | nucleus | 23.71 | 25.84 |
| Solyc03g097120.2.1 | Tomato | nucleus | 32.22 | 25.46 |
| Solyc08g076590.2.1 | Tomato | nucleus | 31.7 | 25.1 |
| Solyc08g005170.2.1 | Tomato | nucleus | 32.99 | 24.29 |
| Solyc06g072750.2.1 | Tomato | nucleus | 28.87 | 23.24 |
| Solyc12g007070.1.1 | Tomato | nucleus | 20.1 | 21.14 |
| Solyc09g009100.2.1 | Tomato | nucleus | 23.71 | 18.07 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | UniProt:K4CGA4 | PFAM:PF00447 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF154 | SMART:SM00415 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:Solyc07g055710.2 | EnsemblPlants:Solyc07g055710.2.1 | UniParc:UPI0001FBD95C | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : |
Description
No Description!
Coordinates
chr7:-:63648888..63650452
Molecular Weight (calculated)
44377.4 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.840
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNCNGGSSS SSPAPFLLKT YELVDDSYTN PVVSWSHNGR SFVVWNPPEF ARDLLPKYFK HNNFSSFIRQ LNTYGFRKVD PEQWEFANED FLRGRRHLLK
101: NIYRRKPIHS HSAAAGTGQS VAPLTDSERQ EYEDEIERLK RENSLLQSSA ENQLKFNGEY ESGIKSMEQR LQNVAHRQGK LISLLAQLLQ TPGFSSDFTQ
201: SASRKRRLLI SNYLIDEENS PKFDLEMVKK LDSSINFWER FLYGVQTQDF EHTHSPIVTH TSSNDSAKRN SPIDHSPSSS ELGPLNPVMS STYENLERQL
301: KPSDNQIECK TSKTSELVSN SGNDVFWQQF LTETPGCTEP QQVENKGINE STRDIRLGDS HRYWWNRGVN LENLAERMGH LSSPATGS
101: NIYRRKPIHS HSAAAGTGQS VAPLTDSERQ EYEDEIERLK RENSLLQSSA ENQLKFNGEY ESGIKSMEQR LQNVAHRQGK LISLLAQLLQ TPGFSSDFTQ
201: SASRKRRLLI SNYLIDEENS PKFDLEMVKK LDSSINFWER FLYGVQTQDF EHTHSPIVTH TSSNDSAKRN SPIDHSPSSS ELGPLNPVMS STYENLERQL
301: KPSDNQIECK TSKTSELVSN SGNDVFWQQF LTETPGCTEP QQVENKGINE STRDIRLGDS HRYWWNRGVN LENLAERMGH LSSPATGS
001: MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS
Arabidopsis Description
HSFA4CRHA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.