Factsheet for Solyc12g098520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011871	Potato	nucleus	97.49	97.49
KRH42748	Soybean	nucleus	64.64	64.78
KRH58845	Soybean	nucleus	64.85	64.72
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	53.77	58.41
AT4G13980.1	Thale cress	nucleus	52.72	54.08
CDY12723	Canola	nucleus	51.46	51.79
GSMUA_Achr9P01640_001	Banana	nucleus	41.21	51.71
Bra032752.1-P	Field mustard	nucleus	51.05	51.15
CDY01180	Canola	nucleus	51.05	51.15
GSMUA_Achr6P27750_001	Banana	nucleus	40.59	49.36
Os02t0496100-01	Rice	nucleus	48.33	48.63
EES05094	Sorghum	nucleus	47.28	46.6
TraesCS6A01G098800.1	Wheat	nucleus	44.56	46.51
GSMUA_Achr8P28330_001	Banana	nucleus	31.8	46.48
TraesCS6D01G083800.1	Wheat	nucleus	44.35	46.29
HORVU6Hr1G017910.1	Barley	nucleus	44.14	46.17
TraesCS6B01G127000.1	Wheat	nucleus	43.93	46.15
Solyc06g053960.2.1	Tomato	nucleus	13.6	45.77
Zm00001d016520_P001	Maize	nucleus	46.44	42.05
Solyc07g055710.2.1	Tomato	nucleus	28.24	34.79
Solyc03g006000.2.1	Tomato	nucleus	28.24	33.67
Solyc02g072000.2.1	Tomato	nucleus	28.66	33.58
Solyc09g065660.2.1	Tomato	nucleus	25.94	33.33
Solyc07g040680.2.1	Tomato	nucleus	22.38	30.06
Solyc09g082670.2.1	Tomato	nucleus	21.97	29.49
Solyc06g072750.2.1	Tomato	nucleus	28.24	28.01
Solyc03g097120.2.1	Tomato	nucleus	28.66	27.9
Solyc08g005170.2.1	Tomato	nucleus	30.13	27.32
Solyc08g076590.2.1	Tomato	nucleus	27.62	26.94
Solyc12g007070.1.1	Tomato	nucleus	19.25	24.93
Solyc09g009100.2.1	Tomato	nucleus	21.97	20.63

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4DHM5	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	SMART:SM00415	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc12g098520.1	EnsemblPlants:Solyc12g098520.1.1	UniParc:UPI000276A1FD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

Heat stress transcription factor A-5 [Source:Projected from Arabidopsis thaliana (AT4G13980) UniProtKB/Swiss-Prot;Acc:Q94BZ5]

Coordinates

chr12:-:65999627..66003357

Molecular Weight (calculated)

53377.9 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.688

Length

478 amino acids

Sequence
(BLAST)

001: MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH
101: LLKNIHRRKP IHSHSHPPGS TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI FVEKAIQNPD FVERLAQKLE
201: SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY
301: TPEAIELSDT GTSFMLKMDS SLPHASSNAE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA SCLSQVDKNQ YSARMPQIGQ EIGKCFESQS DANDKIPPTD
401: DKSLPPSHDA TTNKQVPAAA PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.