Factsheet for Solyc06g053960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041944	Potato	nucleus	90.85	37.5
CDX94887	Canola	nucleus	64.08	33.7
CDX94884	Canola	nucleus	62.68	31.01
GSMUA_Achr8P20520_001	Banana	nucleus	58.45	28.62
Solyc09g082670.2.1	Tomato	nucleus	71.13	28.37
CDY14893	Canola	nucleus	50.0	27.1
CDX92958	Canola	nucleus	64.08	26.45
Bra035993.1-P	Field mustard	nucleus	50.7	25.62
KRH31657	Soybean	nucleus	60.56	25.52
GSMUA_Achr6P24430_001	Banana	nucleus	54.93	25.32
AT5G43840.1	Thale cress	nucleus	50.0	25.18
CDY34229	Canola	nucleus	66.9	25.07
GSMUA_Achr1P27200_001	Banana	nucleus	58.45	24.92
GSMUA_Achr5P03000_001	Banana	nucleus	58.45	24.85
CDY10674	Canola	nucleus	67.61	24.68
CDY10311	Canola	nucleus	66.9	24.48
KRG91367	Soybean	nucleus	62.68	24.32
Os10t0419300-00	Rice	nucleus	61.27	24.3
CDY46607	Canola	nucleus	63.38	24.26
EER93298	Sorghum	nucleus	57.75	24.19
Bra023800.1-P	Field mustard	nucleus	66.9	23.87
Bra001885.1-P	Field mustard	nucleus	65.49	23.79
AT3G22830.1	Thale cress	nucleus	67.61	23.65
Bra033913.1-P	Field mustard	nucleus	67.61	23.59
Zm00001d032923_P002	Maize	nucleus	59.15	23.53
CDY46606	Canola	nucleus	63.38	23.5
KRH35452	Soybean	nucleus	60.56	23.5
VIT_05s0020g04090.t01	Wine grape	nucleus	57.75	23.3
EER95940	Sorghum	nucleus	60.56	23.12
EER94213	Sorghum	nucleus	58.45	22.93
EER90889	Sorghum	nucleus	59.86	22.91
TraesCS1B01G396000.1	Wheat	nucleus	57.75	22.91
TraesCS4B01G278100.1	Wheat	nucleus	54.93	22.87
TraesCS4D01G276500.1	Wheat	nucleus	54.93	22.87
HORVU1Hr1G083420.2	Barley	nucleus	59.86	22.85
TraesCS1A01G375600.2	Wheat	nucleus	59.15	22.83
TraesCS1D01G382900.1	Wheat	nucleus	58.45	22.8
TraesCS4A01G027700.1	Wheat	nucleus	54.23	22.58
TraesCS5A01G437900.1	Wheat	nucleus	54.93	22.54
Zm00001d018941_P001	Maize	nucleus	59.15	22.4
HORVU4Hr1G073650.2	Barley	nucleus	54.23	22.38
Zm00001d033987_P001	Maize	nucleus	57.04	21.83
HORVU5Hr1G094380.1	Barley	nucleus	56.34	21.56
TraesCS5D01G445100.1	Wheat	nucleus	52.82	21.55
TraesCS5B01G440700.1	Wheat	nucleus	53.52	21.53
Solyc09g065660.2.1	Tomato	nucleus	56.34	21.51
Os07t0178600-01	Rice	nucleus	56.34	21.51
TraesCS5D01G393200.1	Wheat	nucleus	56.34	21.22
Os03t0161900-02	Rice	nucleus	56.34	21.11
TraesCS5A01G383800.1	Wheat	nucleus	54.93	20.97
Zm00001d027757_P001	Maize	nucleus	56.34	20.83
TraesCS2B01G105100.1	Wheat	nucleus	59.15	20.74
EER95463	Sorghum	nucleus	56.34	20.46
TraesCS2D01G087400.1	Wheat	nucleus	59.15	20.39
TraesCS2A01G089300.1	Wheat	nucleus	59.15	20.34
HORVU2Hr1G014590.1	Barley	nucleus	59.86	20.33
Solyc07g040680.2.1	Tomato	nucleus	48.59	19.38
TraesCS3A01G405200.1	Wheat	nucleus	53.52	19.14
Solyc07g055710.2.1	Tomato	nucleus	47.89	17.53
TraesCS3B01G438900.1	Wheat	nucleus	52.82	17.32
Solyc12g007070.1.1	Tomato	nucleus	42.25	16.26
Solyc03g006000.2.1	Tomato	nucleus	45.77	16.21
Solyc02g072000.2.1	Tomato	nucleus	46.48	16.18
HORVU5Hr1G105770.2	Barley	nucleus	54.93	14.97
Solyc06g072750.2.1	Tomato	nucleus	50.0	14.73
Solyc03g097120.2.1	Tomato	nucleus	50.0	14.46
Solyc08g005170.2.1	Tomato	nucleus	53.52	14.42
Solyc09g009100.2.1	Tomato	nucleus	49.3	13.75
Solyc08g076590.2.1	Tomato	nucleus	47.18	13.67
Solyc12g098520.1.1	Tomato	nucleus	45.77	13.6
Zm00001d034433_P003	Maize	nucleus	55.63	12.72

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4C683	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF139	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc06g053960.2
EnsemblPlants:Solyc06g053960.2.1	UniParc:UPI0002765971	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:36843611..36846535

Molecular Weight (calculated)

16644.5 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.796

Length

142 amino acids

Sequence
(BLAST)

001: MDHFGNLIKE EFDGSFLTPQ PKECLHENGP PPFLTKTYEL VDDPSNNDVV SWSRGYNSFI VWDPQNLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPDH
101: WEFANEGFLR GKKHLLRTIR RRKPSNFIKS SSSINNQASK GY

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.