Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027757_P001 | Maize | nucleus | 88.24 | 89.84 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 59.59 | 68.33 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 59.08 | 67.74 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 58.57 | 67.16 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 59.08 | 67.15 |
| Os03t0161900-02 | Rice | nucleus | 63.17 | 65.17 |
| EER94213 | Sorghum | nucleus | 55.75 | 60.22 |
| Solyc06g053960.2.1 | Tomato | nucleus | 20.46 | 56.34 |
| CDX95313 | Canola | nucleus | 37.34 | 54.48 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 42.46 | 53.9 |
| Bra012829.1-P | Field mustard | nucleus | 34.02 | 53.63 |
| AT3G51910.1 | Thale cress | nucleus | 37.08 | 53.31 |
| Bra012828.1-P | Field mustard | nucleus | 36.32 | 52.79 |
| CDX90626 | Canola | nucleus | 36.06 | 52.42 |
| CDY29054 | Canola | nucleus | 35.04 | 51.7 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 46.29 | 50.14 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 42.2 | 49.55 |
| CDX90627 | Canola | nucleus | 36.06 | 49.13 |
| EER90889 | Sorghum | nucleus | 46.04 | 48.52 |
| KRG95588 | Soybean | nucleus | 45.52 | 48.11 |
| EER93298 | Sorghum | nucleus | 41.69 | 48.08 |
| KRH32059 | Soybean | nucleus | 41.43 | 47.51 |
| KRH67266 | Soybean | nucleus | 46.55 | 47.15 |
| KRH31657 | Soybean | nucleus | 39.64 | 45.99 |
| EER95940 | Sorghum | nucleus | 43.73 | 45.97 |
| Solyc09g065660.2.1 | Tomato | nucleus | 43.73 | 45.97 |
| PGSC0003DMT400049793 | Potato | nucleus | 42.71 | 45.88 |
| AT3G63350.1 | Thale cress | nucleus | 32.99 | 45.74 |
| PGSC0003DMT400049795 | Potato | nucleus | 41.94 | 45.56 |
| KRG91367 | Soybean | nucleus | 42.46 | 45.36 |
| Bra007739.1-P | Field mustard | nucleus | 32.74 | 44.91 |
| CDY11470 | Canola | nucleus | 32.74 | 44.91 |
| CDX76693 | Canola | nucleus | 32.23 | 44.21 |
| CDY34229 | Canola | nucleus | 42.46 | 43.8 |
| KRH35452 | Soybean | nucleus | 40.92 | 43.72 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 39.13 | 43.47 |
| CDX94887 | Canola | nucleus | 29.92 | 43.33 |
| CDY10674 | Canola | nucleus | 42.97 | 43.19 |
| PGSC0003DMT400016511 | Potato | nucleus | 39.9 | 43.09 |
| Solyc09g082670.2.1 | Tomato | nucleus | 39.13 | 42.98 |
| CDY46606 | Canola | nucleus | 41.69 | 42.56 |
| AT3G22830.1 | Thale cress | nucleus | 43.73 | 42.12 |
| CDY10311 | Canola | nucleus | 41.69 | 42.01 |
| Bra023800.1-P | Field mustard | nucleus | 42.71 | 41.96 |
| Bra033913.1-P | Field mustard | nucleus | 43.22 | 41.52 |
| AT5G43840.1 | Thale cress | nucleus | 29.92 | 41.49 |
| CDY46607 | Canola | nucleus | 39.13 | 41.24 |
| CDY14893 | Canola | nucleus | 27.11 | 40.46 |
| CDX94884 | Canola | nucleus | 29.67 | 40.42 |
| PGSC0003DMT400041944 | Potato | nucleus | 35.55 | 40.41 |
| Bra001885.1-P | Field mustard | nucleus | 39.9 | 39.9 |
| Bra035993.1-P | Field mustard | nucleus | 28.39 | 39.5 |
| CDX92958 | Canola | nucleus | 33.5 | 38.08 |
| KXG29862 | Sorghum | nucleus | 24.04 | 35.21 |
| KXG33312 | Sorghum | nucleus | 22.25 | 33.46 |
| EER89919 | Sorghum | nucleus | 23.53 | 32.97 |
| KXG20211 | Sorghum | nucleus | 31.97 | 29.98 |
| EES00942 | Sorghum | plastid | 29.67 | 29.44 |
| EER95242 | Sorghum | nucleus | 30.95 | 29.16 |
| EES01103 | Sorghum | nucleus | 26.34 | 28.22 |
| EES06898 | Sorghum | nucleus | 34.27 | 27.02 |
| EER93074 | Sorghum | nucleus | 35.04 | 26.0 |
| EES01479 | Sorghum | nucleus | 25.32 | 22.81 |
| EES18551 | Sorghum | nucleus | 27.37 | 22.48 |
| EES05094 | Sorghum | nucleus | 27.37 | 22.06 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | EntrezGene:8082148 | UniProt:C5WWX9 | ncoils:Coil | EnsemblPlants:EER95463 |
| ProteinID:EER95463 | ProteinID:EER95463.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF201 | SMART:SM00415 | EnsemblPlantsGene:SORBI_3001G496200 | SUPFAM:SSF46785 | UniParc:UPI0001A82FE7 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_002468465.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:76612455..76614423
Molecular Weight (calculated)
43777.6 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.666
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRMLPGTVT VKEEWPPEEE EEEEVVVEDV DAPRPMEGLH EVGPPPFLTK TFDLVADPAT DEVISWGRAG NSFVVWDPHV FAAVLLPRFF KHNNFSSFVR
101: QLNTYGFRKI DPDRWEFANE GFLRGQRHLL RLIKRRRPAP PPPYLQASQS QSQGSCLEVG QFGGLDGEMD RLRRDKSILL AEVVKLRQEQ QSTRAGMRAM
201: EERLQHAEHK QVQMMGFLAR AMQSPDFFQQ LAQQQDRRRE LEGALMLSAA ASRKRRRPIG TAPALLDGGV QEEEEEEQAA DDDPTATQAL FAELDERGTT
301: SELENLALNI QGLGSSKRRQ GGGGARSQQR AAAVGGGETA ELTDDFWEEL LNEGMRGGAA AELLPPERRR PGWYVDALAQ KLSSMSNTTA K
101: QLNTYGFRKI DPDRWEFANE GFLRGQRHLL RLIKRRRPAP PPPYLQASQS QSQGSCLEVG QFGGLDGEMD RLRRDKSILL AEVVKLRQEQ QSTRAGMRAM
201: EERLQHAEHK QVQMMGFLAR AMQSPDFFQQ LAQQQDRRRE LEGALMLSAA ASRKRRRPIG TAPALLDGGV QEEEEEEQAA DDDPTATQAL FAELDERGTT
301: SELENLALNI QGLGSSKRRQ GGGGARSQQR AAAVGGGETA ELTDDFWEEL LNEGMRGGAA AELLPPERRR PGWYVDALAQ KLSSMSNTTA K
001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN
Arabidopsis Description
HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.