CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048041_P004	Maize	nucleus	90.12	82.74
Os03t0224700-01	Rice	nucleus	69.88	70.73
TraesCS4A01G062800.1	Wheat	nucleus	61.45	66.58
TraesCS4D01G239600.1	Wheat	nucleus	61.45	66.41
TraesCS4B01G239700.1	Wheat	nucleus	61.45	66.41
HORVU0Hr1G008940.2	Barley	cytosol, nucleus	46.75	66.21
EER93298	Sorghum	nucleus	29.4	35.99
EER95940	Sorghum	nucleus	30.6	34.14
EER94213	Sorghum	nucleus	29.64	33.98
GSMUA_Achr2P21640_001	Banana	nucleus	26.99	33.73
KXG29862	Sorghum	nucleus	21.2	32.96
EER95463	Sorghum	nucleus	29.16	30.95
EER89919	Sorghum	nucleus	20.72	30.82
EES00942	Sorghum	plastid	28.92	30.46
EER90889	Sorghum	nucleus	26.99	30.19
KXG33312	Sorghum	nucleus	18.31	29.23
EER93074	Sorghum	nucleus	32.77	25.81
KXG20211	Sorghum	nucleus	23.13	23.02
EES01103	Sorghum	nucleus	19.28	21.92
EES06898	Sorghum	nucleus	26.02	21.77
EES01479	Sorghum	nucleus	21.69	20.74
EES18551	Sorghum	nucleus	23.61	20.59
EES05094	Sorghum	nucleus	23.86	20.41

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8085272	UniProt:C5WSM1	EnsemblPlants:EER95242	ProteinID:EER95242
ProteinID:EER95242.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF175
SMART:SM00415	EnsemblPlantsGene:SORBI_3001G450700	SUPFAM:SSF46785	unigene:Sbi.20691	UniParc:UPI0001A8337B	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002468244.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:72751311..72756591

Molecular Weight (calculated)

46459.3 Da

IEP (calculated)

4.675

GRAVY (calculated)

-0.696

Length

415 amino acids

Sequence
(BLAST)

001: MGSKKRSPQH PASPAGGEVG AQTAGKAVPV TAAPESAPVS VVPKPPDVAP FLTKVYDMVS DPATDAVISW SAAGGSFVIW DSHVFERDLL PRHFKHNHFT
101: SFIRQLNTYG FHKVDPDRWE WANEGFVKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIGKY GGLAKEVETL KRDKALLMQQ LVDLRQYQQS
201: SSLEVQNLIQ RLRVMEQNQQ QMMALLAIVV QNPDFLNQLV QQQRRSNWWN DDGNRKRRFQ ALEHGPVDDQ ETSGGGAQII QYRPPVPETS NQPIPGNEAI
301: YSTPAQPVSS HAQPVSSPAE EMPMDVEMTS NNVDTLDSTG NDFTDTSALC EWDDMDIFGD ELEYILQQPE QNFQVDPPLT VEDYGYDRPR LEQDCQMEAQ
401: QDCKNPQYAD VTTEA

Best Arabidopsis Sequence Match ( AT4G17750.1 )
(BLAST)

001: MFVNFKYFSF FIRTKMDGVT GGGTNIGEAV TAPPPRNPHP ATLLNANSLP PPFLSKTYDM VEDPATDAIV SWSPTNNSFI VWDPPEFSRD LLPKYFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKKIS RRKSVQGHGS SSSNPQSQQL SQGQGSMAAL SSCVEVGKFG LEEEVEQLKR DKNVLMQELV
201: KLRQQQQTTD NKLQVLVKHL QVMEQRQQQI MSFLAKAVQN PTFLSQFIQK QTDSNMHVTE ANKKRRLRED STAATESNSH SHSLEASDGQ IVKYQPLRND
301: SMMWNMMKTD DKYPFLDGFS SPNQVSGVTL QEVLPITSGQ SQAYASVPSG QPLSYLPSTS TSLPDTIMPE TSQIPQLTRE SINDFPTENF MDTEKNVPEA
401: FISPSPFLDG GSVPIQLEGI PEDPEIDELM SNFEFLEEYM PESPVFGDAT TLENNNNNNN NNNNNNNNNN NNNTNGRHMD KLIEELGLLT SETEH

Arabidopsis Description

HSFA1AHeat stress transcription factor A-1a [Source:UniProtKB/Swiss-Prot;Acc:P41151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.