Factsheet for TraesCS4D01G239600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G239700.1	Wheat	nucleus	97.4	97.4
TraesCS4A01G062800.1	Wheat	nucleus	93.49	93.73
HORVU0Hr1G008940.2	Barley	cytosol, nucleus	67.19	88.05
Os03t0224700-01	Rice	nucleus	66.93	62.68
EER95242	Sorghum	nucleus	66.41	61.45
Zm00001d048041_P004	Maize	nucleus	64.84	55.09
TraesCS5D01G445100.1	Wheat	nucleus	31.25	34.48
TraesCS4D01G276500.1	Wheat	nucleus	30.47	34.31
TraesCS4D01G358900.1	Wheat	nucleus	24.48	34.06
GSMUA_Achr2P21640_001	Banana	nucleus	29.43	34.04
TraesCS1D01G382900.1	Wheat	nucleus	30.99	32.69
TraesCS3D01G280600.1	Wheat	nucleus	20.05	31.95
TraesCS7D01G367700.1	Wheat	nucleus	21.09	30.57
TraesCS5D01G393200.1	Wheat	nucleus	29.43	29.97
TraesCS2D01G087400.1	Wheat	nucleus	30.99	28.88
TraesCS3D01G385900.1	Wheat	nucleus	21.09	26.47
TraesCS3D01G386000.1	Wheat	nucleus	21.09	25.8
TraesCS3D01G227200.1	Wheat	nucleus	20.57	24.61
TraesCS5D01G553300.1	Wheat	nucleus	33.33	24.52
TraesCS6D01G083800.1	Wheat	nucleus	25.78	21.62
TraesCS3D01G289000.1	Wheat	nucleus	22.92	21.15
TraesCS2D01G211400.1	Wheat	nucleus	26.82	20.64

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF175	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS4D01G239600	EnsemblPlants:TraesCS4D01G239600.1
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:401638569..401641250

Molecular Weight (calculated)

42917.5 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.627

Length

384 amino acids

Sequence
(BLAST)

001: MGSSKGSPPP SAAGPSSAGN APAPVGPVPR PPEVAPFLTK VYDMVSDAAT DKVMSWTDAG NSFVIWDAHA FERDLLSRHF KHRNFSSFIR QLNTYGFRKV
101: DPDRWEWANE GFLRDQKHLL KIIKRKKRPQ EAGRELEKAP VKAAPGTENI EIGRYGGLVK EVETLKRDKA LLMKQLVDLR LYQQSSNLEV QSLIQRLQVM
201: EQNQKQMMAL LAIVVQNPSL LNQLVQQQQQ QRRNNCVYED GNKKRRFPAL EQGPVTDHET SGSGAEIIQY RPPVPETSSQ VIADEAFLSA TAQPISSAAL
301: NMPMDIDTQT TLGNLNTQGS SGDIFADMPA LPDFEDMHLW FSEDGEPTLT IQDYDEFPQS GQDCQMEAQH NYNNPQHADA ITEA

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.