Factsheet for TraesCS3D01G289000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G289200.1	Wheat	nucleus	93.51	90.05
TraesCS3B01G323800.1	Wheat	nucleus	93.99	88.66
HORVU3Hr1G071550.3	Barley	nucleus	90.14	86.81
Os01t0749300-02	Rice	nucleus	74.52	70.45
EES01479	Sorghum	nucleus	72.12	69.12
Zm00001d012749_P001	Maize	nucleus	69.47	66.74
VIT_12s0028g01410.t01	Wine grape	nucleus	39.42	44.44
GSMUA_Achr3P15640_001	Banana	nucleus	46.63	42.83
GSMUA_Achr8P27750_001	Banana	nucleus	21.88	41.18
AT5G45710.3	Thale cress	nucleus	34.13	41.16
CDY13041	Canola	nucleus	30.29	41.04
VIT_10s0003g01770.t01	Wine grape	nucleus	33.89	40.63
CDY23108	Canola	nucleus	33.17	40.59
Bra017595.1-P	Field mustard	nucleus	32.69	40.0
CDX76506	Canola	nucleus	34.62	39.34
CDY09259	Canola	nucleus	34.13	39.23
GSMUA_Achr6P31750_001	Banana	nucleus	45.19	38.68
KRH11063	Soybean	nucleus	36.06	38.27
KRH21206	Soybean	nucleus	36.06	38.27
Bra020988.1-P	Field mustard	nucleus	31.97	38.11
KRH42919	Soybean	nucleus	36.78	38.06
AT4G18880.1	Thale cress	nucleus	36.54	37.91
KRH59030	Soybean	nucleus	36.54	37.81
CDX99415	Canola	nucleus	34.86	37.76
Solyc07g055710.2.1	Tomato	nucleus	35.1	37.63
Bra012571.1-P	Field mustard	nucleus	35.1	37.44
CDY69818	Canola	nucleus	34.86	37.18
CDY01562	Canola	nucleus	35.1	37.15
Solyc03g006000.2.1	Tomato	nucleus	35.34	36.66
PGSC0003DMT400044683	Potato	nucleus	36.3	36.65
PGSC0003DMT400071487	Potato	nucleus	35.34	36.48
Solyc02g072000.2.1	Tomato	nucleus	35.1	35.78
TraesCS6D01G083800.1	Wheat	nucleus	30.77	27.95
TraesCS7D01G367700.1	Wheat	nucleus	17.79	27.92
TraesCS3D01G280600.1	Wheat	nucleus	16.11	27.8
TraesCS4D01G358900.1	Wheat	nucleus	18.27	27.54
TraesCS1D01G382900.1	Wheat	nucleus	24.04	27.47
Bra013358.1-P	Field mustard	nucleus	33.41	26.89
CDX78902	Canola	nucleus	33.41	26.89
TraesCS5D01G445100.1	Wheat	nucleus	22.36	26.72
TraesCS4D01G276500.1	Wheat	nucleus	21.15	25.81
TraesCS3D01G385900.1	Wheat	nucleus	17.55	23.86
TraesCS3D01G227200.1	Wheat	nucleus	18.27	23.68
TraesCS5D01G393200.1	Wheat	nucleus	21.15	23.34
TraesCS2D01G087400.1	Wheat	nucleus	23.08	23.3
TraesCS3D01G386000.1	Wheat	nucleus	17.31	22.93
TraesCS4D01G239600.1	Wheat	nucleus	21.15	22.92
TraesCS5D01G553300.1	Wheat	nucleus	28.61	22.8
TraesCS2D01G211400.1	Wheat	nucleus	23.08	19.24

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PANTHER:PTHR10015
PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3D01G289000	EnsemblPlants:TraesCS3D01G289000.1	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:398299634..398301833

Molecular Weight (calculated)

46427.4 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.829

Length

416 amino acids

Sequence
(BLAST)

001: MEGSGGSASL PPFLTKTYEM VDEPATDAVV AWTPSGTSFV HNNFSSFVRQ LNTYGFRKVD PEQWEFANEE FLRDQRHRLK NIHRRKPIFS HSSHTQGAGP
101: LADSERRDYE EEIERLKCDN ASLNLQLERK KTDMESKMKA LEDKLFAIED QQKNLISYVR EIVNAPGFLS SFVEQSDHHG KKRRLPKPIS FHDDACTQGN
201: QIMHCDLVNS PAHELFRSSF DKMESSLNSL ENFFKEASEA FGNDVSSDGD VPGHSSAVVL TELHSTGESD PHAQSPPSMM HTCSAGVGDS HSSRDIAESA
301: SCPESPLLPQ AHSRADSRAK VSEIDVNLEP AVTENGPSRD QQPTQDLPAD ANDGFWQQFL TEQPGLTHAH QEAQSERRDR EANQTTAGDR GSFWLDKSSI
401: EQMTKKLGHL TSAEKT

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.