Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13041 | Canola | nucleus | 71.59 | 80.46 |
| Bra017595.1-P | Field mustard | nucleus | 78.26 | 79.41 |
| CDY23108 | Canola | nucleus | 76.81 | 77.94 |
| AT4G18880.1 | Thale cress | nucleus | 64.35 | 55.36 |
| KRH21206 | Soybean | nucleus | 57.68 | 50.77 |
| KRH11063 | Soybean | nucleus | 57.68 | 50.77 |
| KRH59030 | Soybean | nucleus | 58.55 | 50.25 |
| VIT_10s0003g01770.t01 | Wine grape | nucleus | 50.14 | 49.86 |
| KRH42919 | Soybean | nucleus | 57.97 | 49.75 |
| Solyc02g072000.2.1 | Tomato | nucleus | 51.59 | 43.63 |
| Solyc03g006000.2.1 | Tomato | nucleus | 50.14 | 43.14 |
| PGSC0003DMT400071487 | Potato | nucleus | 50.14 | 42.93 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 27.25 | 42.53 |
| Os01t0749300-02 | Rice | nucleus | 48.99 | 38.41 |
| EES01479 | Sorghum | nucleus | 47.25 | 37.56 |
| Zm00001d012749_P001 | Maize | nucleus | 46.67 | 37.18 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 46.09 | 36.81 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 45.22 | 36.11 |
| TraesCS3B01G323800.1 | Wheat | nucleus | 45.22 | 35.37 |
| TraesCS3D01G289000.1 | Wheat | nucleus | 41.16 | 34.13 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 44.64 | 34.0 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 47.54 | 33.74 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 42.03 | 33.64 |
| Zm00001d010812_P001 | Maize | nucleus | 42.61 | 32.74 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 41.45 | 32.28 |
| Os05t0530400-01 | Rice | nucleus | 42.61 | 32.03 |
| EES18551 | Sorghum | nucleus | 43.19 | 31.3 |
| AT3G51910.1 | Thale cress | nucleus | 23.77 | 30.15 |
| Zm00001d038746_P001 | Maize | nucleus | 40.29 | 29.64 |
| AT3G63350.1 | Thale cress | nucleus | 22.9 | 28.01 |
| AT5G43840.1 | Thale cress | nucleus | 22.61 | 27.66 |
| AT4G13980.1 | Thale cress | nucleus | 36.23 | 26.82 |
| AT2G26150.1 | Thale cress | nucleus | 25.8 | 25.8 |
| AT5G54070.1 | Thale cress | nucleus | 22.32 | 23.26 |
| AT3G22830.1 | Thale cress | nucleus | 27.25 | 23.15 |
| AT3G24520.1 | Thale cress | nucleus | 22.03 | 23.03 |
| AT5G16820.2 | Thale cress | nucleus | 31.88 | 22.87 |
| AT3G02990.1 | Thale cress | nucleus | 31.01 | 22.86 |
| AT4G17750.1 | Thale cress | nucleus | 32.46 | 22.63 |
| AT1G32330.1 | Thale cress | nucleus | 31.59 | 22.47 |
| AT5G03720.1 | Thale cress | nucleus | 25.51 | 21.36 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | EntrezGene:834610 | UniProt:A0A178UPK9 | ProteinID:AAQ54332.1 | ProteinID:AED95287.1 |
| EMBL:AK229058 | ProteinID:ANM70169.1 | Symbol:AT-HSFA4C | ArrayExpress:AT5G45710 | EnsemblPlantsGene:AT5G45710 | RefSeq:AT5G45710 |
| TAIR:AT5G45710 | RefSeq:AT5G45710-TAIR-G | EnsemblPlants:AT5G45710.3 | Unigene:At.43916 | ProteinID:BAB09213.1 | EMBL:BT015049 |
| EMBL:BT015843 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009791 | GO:GO:0009958 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0048364 | GO:GO:0048527 | GO:GO:0048530 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| InterPro:IPR036388 | RefSeq:NP_001331800.1 | RefSeq:NP_199383.1 | ProteinID:OAO95054.1 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF154 | UniProt:Q9FK72 | SMART:SM00415 | SUPFAM:SSF46785 |
| UniParc:UPI00000A1A60 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
HSFA4CRHA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPK9]
Coordinates
chr5:+:18540865..18542864
Molecular Weight (calculated)
39649.9 Da
IEP (calculated)
5.682
GRAVY (calculated)
-1.007
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VAWSENNKSF IVKNPAEFSR DLLPRFFKHK NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS
101: HRRKPVHSHS LVNLQAQNPL TESERRSMED QIERLKNEKE GLLAELQNQE QERKEFELQV TTLKDRLQHM EQHQKSIVAY VSQVLGKPGL SLNLENHERR
201: KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS GLQSSSMDHD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP
301: GSTEQQEVQS ERRDVGNDNN GNKIGNQRTY WWNSGNVNNI TEKAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.