Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14893 | Canola | nucleus | 68.44 | 73.66 |
| Bra035993.1-P | Field mustard | nucleus | 72.69 | 72.95 |
| Solyc06g053960.2.1 | Tomato | nucleus | 25.18 | 50.0 |
| AT3G51910.1 | Thale cress | nucleus | 38.3 | 39.71 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 46.45 | 37.22 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 37.23 | 36.21 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 42.2 | 35.63 |
| KRH31657 | Soybean | nucleus | 42.55 | 35.61 |
| KRH35452 | Soybean | nucleus | 46.1 | 35.52 |
| KRG91367 | Soybean | nucleus | 45.74 | 35.25 |
| AT3G63350.1 | Thale cress | nucleus | 35.11 | 35.11 |
| Solyc09g082670.2.1 | Tomato | nucleus | 43.97 | 34.83 |
| TraesCS4B01G278100.1 | Wheat | nucleus | 41.49 | 34.31 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 41.49 | 34.31 |
| PGSC0003DMT400016511 | Potato | nucleus | 43.97 | 34.25 |
| TraesCS4A01G027700.1 | Wheat | nucleus | 41.13 | 34.02 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 41.13 | 33.72 |
| Zm00001d032923_P002 | Maize | nucleus | 42.55 | 33.61 |
| EER94213 | Sorghum | nucleus | 42.91 | 33.43 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 36.17 | 33.12 |
| EER93298 | Sorghum | nucleus | 39.72 | 33.04 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 40.43 | 32.95 |
| PGSC0003DMT400041944 | Potato | nucleus | 40.07 | 32.85 |
| Os10t0419300-00 | Rice | nucleus | 41.49 | 32.68 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 42.91 | 32.53 |
| AT2G26150.1 | Thale cress | nucleus | 39.72 | 32.46 |
| TraesCS1B01G396000.1 | Wheat | nucleus | 40.78 | 32.12 |
| AT3G22830.1 | Thale cress | nucleus | 46.1 | 32.02 |
| TraesCS1D01G382900.1 | Wheat | nucleus | 41.13 | 31.87 |
| EER95940 | Sorghum | nucleus | 41.49 | 31.45 |
| TraesCS5D01G445100.1 | Wheat | nucleus | 38.65 | 31.32 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 40.78 | 31.25 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 36.88 | 31.23 |
| Zm00001d018941_P001 | Maize | nucleus | 41.49 | 31.2 |
| TraesCS5B01G440700.1 | Wheat | nucleus | 39.01 | 31.16 |
| Os07t0178600-01 | Rice | nucleus | 40.07 | 30.38 |
| EER95463 | Sorghum | nucleus | 41.49 | 29.92 |
| Os03t0161900-02 | Rice | nucleus | 40.07 | 29.82 |
| Zm00001d027757_P001 | Maize | nucleus | 40.43 | 29.69 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 39.01 | 29.65 |
| TraesCS5D01G393200.1 | Wheat | nucleus | 39.36 | 29.44 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 38.65 | 29.3 |
| EER90889 | Sorghum | nucleus | 38.3 | 29.11 |
| Zm00001d033987_P001 | Maize | nucleus | 37.94 | 28.84 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 39.72 | 28.21 |
| TraesCS2B01G105100.1 | Wheat | nucleus | 39.72 | 27.65 |
| TraesCS2D01G087400.1 | Wheat | nucleus | 40.07 | 27.43 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 40.07 | 27.36 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 40.43 | 27.27 |
| TraesCS3B01G438900.1 | Wheat | nucleus | 39.72 | 25.87 |
| AT3G24520.1 | Thale cress | nucleus | 30.14 | 25.76 |
| AT5G54070.1 | Thale cress | nucleus | 28.72 | 24.47 |
| AT1G32330.1 | Thale cress | nucleus | 39.72 | 23.09 |
| AT4G17750.1 | Thale cress | nucleus | 39.72 | 22.63 |
| AT5G45710.3 | Thale cress | nucleus | 27.66 | 22.61 |
| AT5G03720.1 | Thale cress | nucleus | 32.98 | 22.57 |
| AT4G18880.1 | Thale cress | nucleus | 31.91 | 22.44 |
| AT5G16820.2 | Thale cress | nucleus | 37.94 | 22.25 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 39.72 | 21.5 |
| AT3G02990.1 | Thale cress | nucleus | 34.4 | 20.73 |
| AT4G13980.1 | Thale cress | nucleus | 32.27 | 19.53 |
| Zm00001d034433_P003 | Maize | nucleus | 39.01 | 17.71 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | EntrezGene:834406 | ProteinID:AED95016.1 | Symbol:AT-HSFA6A | ArrayExpress:AT5G43840 |
| EnsemblPlantsGene:AT5G43840 | RefSeq:AT5G43840 | TAIR:AT5G43840 | RefSeq:AT5G43840-TAIR-G | EnsemblPlants:AT5G43840.1 | TAIR:AT5G43840.1 |
| ProteinID:BAB11313.1 | ncoils:Coil | EMBL:DQ447035 | EMBL:DQ653345 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| RefSeq:NP_199197.1 | PFAM:PF00447 | PO:PO:0007115 | PO:PO:0009025 | PRINTS:PR00056 | ScanProsite:PS00434 |
| PANTHER:PTHR10015 | PANTHER:PTHR10015:SF262 | UniProt:Q1PDN3 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000016280E |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : | : | : |
Description
HSFA6AHeat stress transcription factor A-6a [Source:UniProtKB/Swiss-Prot;Acc:Q1PDN3]
Coordinates
chr5:-:17625353..17626487
Molecular Weight (calculated)
33157.4 Da
IEP (calculated)
5.482
GRAVY (calculated)
-0.735
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYNLPIPLE GLKETPPTAF LTKTYNIVED SSTNNIVSWS RDNNSFIVWE PETFALICLP RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEHFLKGER
101: HLLKNIKRRK TSSQTQTQSL EGEIHELRRD RMALEVELVR LRRKQESVKT YLHLMEEKLK VTEVKQEMMM NFLLKKIKKP SFLQSLRKRN LQGIKNREQK
201: QEVISSHGVE DNGKFVKAEP EEYGDDIDDQ CGGVFDYGDE LHIASMEHQG QGEDEIEMDS EGIWKGFVLS EEEMCDLVEH FI
101: HLLKNIKRRK TSSQTQTQSL EGEIHELRRD RMALEVELVR LRRKQESVKT YLHLMEEKLK VTEVKQEMMM NFLLKKIKKP SFLQSLRKRN LQGIKNREQK
201: QEVISSHGVE DNGKFVKAEP EEYGDDIDDQ CGGVFDYGDE LHIASMEHQG QGEDEIEMDS EGIWKGFVLS EEEMCDLVEH FI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.