CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018941_P001	Maize	nucleus	91.67	90.93
Os07t0178600-01	Rice	nucleus	80.65	80.65
EER93298	Sorghum	nucleus	63.17	69.32
TraesCS2B01G105100.1	Wheat	nucleus	69.89	64.2
TraesCS2A01G089300.1	Wheat	nucleus	71.24	64.16
HORVU2Hr1G014590.1	Barley	nucleus	71.77	63.88
TraesCS2D01G087400.1	Wheat	nucleus	70.7	63.84
Solyc06g053960.2.1	Tomato	nucleus	23.12	60.56
TraesCS3A01G405200.1	Wheat	nucleus	63.71	59.7
TraesCS3B01G438900.1	Wheat	nucleus	63.17	54.27
VIT_00s0179g00150.t01	Wine grape	nucleus	48.92	50.42
EER94213	Sorghum	nucleus	48.92	50.28
AT3G51910.1	Thale cress	nucleus	36.29	49.63
KRH31657	Soybean	nucleus	44.89	49.55
CDX95313	Canola	nucleus	35.48	49.25
KRG91367	Soybean	nucleus	48.39	49.18
Bra012829.1-P	Field mustard	nucleus	31.99	47.98
KRG95588	Soybean	nucleus	47.31	47.57
KRH32059	Soybean	nucleus	42.74	46.63
VIT_05s0020g04090.t01	Wine grape	nucleus	44.09	46.59
Solyc09g082670.2.1	Tomato	nucleus	44.35	46.35
KRH35452	Soybean	nucleus	45.16	45.9
KRH67266	Soybean	nucleus	47.58	45.85
PGSC0003DMT400049793	Potato	nucleus	44.62	45.6
PGSC0003DMT400016511	Potato	nucleus	44.35	45.58
EER90889	Sorghum	nucleus	45.16	45.28
CDX90626	Canola	nucleus	32.53	44.98
Bra012828.1-P	Field mustard	nucleus	32.53	44.98
Solyc09g065660.2.1	Tomato	nucleus	44.62	44.62
CDY29054	Canola	nucleus	31.72	44.53
PGSC0003DMT400049795	Potato	nucleus	43.01	44.44
CDY34229	Canola	nucleus	45.16	44.33
CDX90627	Canola	nucleus	34.14	44.25
CDY10674	Canola	nucleus	45.97	43.96
EER95463	Sorghum	nucleus	45.97	43.73
CDX94887	Canola	nucleus	31.72	43.7
CDY46606	Canola	nucleus	44.35	43.08
CDY10311	Canola	nucleus	44.62	42.78
CDY14893	Canola	nucleus	30.11	42.75
PGSC0003DMT400041944	Potato	nucleus	39.52	42.73
Bra023800.1-P	Field mustard	nucleus	45.43	42.46
CDY46607	Canola	nucleus	42.2	42.32
Bra033913.1-P	Field mustard	nucleus	46.24	42.26
AT3G22830.1	Thale cress	nucleus	45.7	41.87
AT5G43840.1	Thale cress	nucleus	31.45	41.49
Bra035993.1-P	Field mustard	nucleus	30.91	40.93
CDX94884	Canola	nucleus	31.18	40.42
Bra001885.1-P	Field mustard	nucleus	42.47	40.41
CDY11470	Canola	nucleus	30.11	39.3
Bra007739.1-P	Field mustard	nucleus	30.11	39.3
AT3G63350.1	Thale cress	nucleus	29.57	39.01
KXG29862	Sorghum	nucleus	27.69	38.58
CDX76693	Canola	nucleus	29.3	38.25
CDX92958	Canola	nucleus	34.95	37.79
EER89919	Sorghum	nucleus	26.61	35.48
KXG33312	Sorghum	nucleus	22.85	32.69
EER95242	Sorghum	nucleus	34.14	30.6
EES00942	Sorghum	plastid	31.99	30.2
EES01103	Sorghum	nucleus	28.49	29.04
EER93074	Sorghum	nucleus	41.13	29.03
KXG20211	Sorghum	nucleus	31.72	28.3
EES01479	Sorghum	nucleus	29.57	25.35
EES05094	Sorghum	nucleus	32.8	25.15
EES06898	Sorghum	nucleus	33.33	25.0
EES18551	Sorghum	nucleus	29.03	22.69

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8060732	UniProt:C5XB03	ncoils:Coil	EnsemblPlants:EER95940
ProteinID:EER95940	ProteinID:EER95940.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF139	SMART:SM00415	EnsemblPlantsGene:SORBI_3002G051900	SUPFAM:SSF46785	UniParc:UPI0001A83005
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002459419.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:4929569..4933978

Molecular Weight (calculated)

41768.9 Da

IEP (calculated)

4.452

GRAVY (calculated)

-0.740

Length

372 amino acids

Sequence
(BLAST)

001: MDPMLNPVKE ESHGDGGDLL AAGTEETGDG PSAAVAAAPR PMEGLHDPGP PPFLTKTYDM VDDPSTDPVV SWSATNNSFV VWDPHAFATV LLPRHFKHNN
101: FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQRQLLKNIR RRKPPAQNAT NQQSLGPYLE VGHFGFDAEI DRLKRDKQLL MAEVVKLRQE QQNTKANLKA
201: MEDRLQGTEQ KQQQMMAFLA RVMRNPEFLK HLISQNEMRK ELQDAISKKR RRRIDQGPEL DDLGAGSSLE QGSPVLFNPQ DPVEFLVDGI PTDLESPAFD
301: GQSLIEPQDI DIGSTSEQQQ DMPQEDLNDN FWEQLLNEGL GEENGSPVIE DDMNVLSEKM GFLNSDGPTS TI

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.