Factsheet for Bra023800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34229	Canola	nucleus	94.97	99.74
CDY46606	Canola	nucleus	92.71	96.34
CDY46607	Canola	nucleus	84.42	90.57
Bra033913.1-P	Field mustard	nucleus	83.17	81.33
AT3G22830.1	Thale cress	nucleus	80.9	79.31
Bra001885.1-P	Field mustard	nucleus	75.88	77.24
Solyc06g053960.2.1	Tomato	nucleus	23.87	66.9
KRG91367	Soybean	nucleus	50.75	55.19
KRH31657	Soybean	nucleus	45.98	54.3
Solyc09g082670.2.1	Tomato	nucleus	48.24	53.93
GSMUA_Achr8P20520_001	Banana	nucleus	38.94	53.45
PGSC0003DMT400016511	Potato	nucleus	48.49	53.31
PGSC0003DMT400041944	Potato	nucleus	45.73	52.91
KRH35452	Soybean	nucleus	47.99	52.19
Bra012829.1-P	Field mustard	nucleus	32.16	51.61
Bra012828.1-P	Field mustard	nucleus	33.42	49.44
Os10t0419300-00	Rice	nucleus	44.22	49.16
GSMUA_Achr5P03000_001	Banana	nucleus	41.21	49.1
Zm00001d032923_P002	Maize	nucleus	43.22	48.18
TraesCS4D01G276500.1	Wheat	nucleus	40.7	47.51
EER94213	Sorghum	nucleus	42.96	47.24
TraesCS4B01G278100.1	Wheat	nucleus	40.45	47.21
VIT_05s0020g04090.t01	Wine grape	nucleus	41.71	47.16
GSMUA_Achr6P24430_001	Banana	nucleus	36.18	46.75
TraesCS4A01G027700.1	Wheat	nucleus	39.95	46.63
EER93298	Sorghum	nucleus	39.45	46.31
HORVU4Hr1G073650.2	Barley	nucleus	39.45	45.64
EER95940	Sorghum	nucleus	42.46	45.43
HORVU1Hr1G083420.2	Barley	nucleus	42.46	45.43
GSMUA_Achr1P27200_001	Banana	nucleus	37.44	44.74
Os03t0161900-02	Rice	nucleus	42.46	44.59
TraesCS1A01G375600.2	Wheat	nucleus	41.21	44.57
Zm00001d018941_P001	Maize	nucleus	41.96	44.53
TraesCS1B01G396000.1	Wheat	nucleus	39.7	44.13
TraesCS1D01G382900.1	Wheat	nucleus	40.2	43.96
TraesCS5A01G437900.1	Wheat	nucleus	38.19	43.93
Os07t0178600-01	Rice	nucleus	40.95	43.82
TraesCS5D01G445100.1	Wheat	nucleus	38.19	43.68
Bra007739.1-P	Field mustard	nucleus	31.16	43.51
Bra035993.1-P	Field mustard	nucleus	30.65	43.42
TraesCS5B01G440700.1	Wheat	nucleus	37.94	42.78
EER95463	Sorghum	nucleus	41.96	42.71
Zm00001d027757_P001	Maize	nucleus	40.7	42.19
HORVU5Hr1G094380.1	Barley	nucleus	37.69	40.43
TraesCS2D01G087400.1	Wheat	nucleus	41.71	40.29
TraesCS2B01G105100.1	Wheat	nucleus	40.95	40.25
HORVU2Hr1G014590.1	Barley	nucleus	41.96	39.95
TraesCS2A01G089300.1	Wheat	nucleus	41.46	39.95
Bra000557.1-P	Field mustard	nucleus	34.92	39.94
TraesCS5D01G393200.1	Wheat	nucleus	37.44	39.52
TraesCS5A01G383800.1	Wheat	nucleus	36.68	39.25
EER90889	Sorghum	nucleus	35.68	38.27
Zm00001d033987_P001	Maize	nucleus	35.68	38.27
TraesCS3A01G405200.1	Wheat	nucleus	37.69	37.78
TraesCS3B01G438900.1	Wheat	nucleus	37.19	34.18
Bra040179.1-P	Field mustard	nucleus	36.18	33.33
Bra015050.1-P	Field mustard	nucleus	23.62	30.42
Bra023584.1-P	Field mustard	nucleus	33.67	30.32
HORVU5Hr1G105770.2	Barley	nucleus	39.2	29.94
Bra013253.1-P	Field mustard	nucleus	20.85	29.54
Bra021381.1-P	Field mustard	nucleus	33.67	29.52
Bra032023.1-P	Field mustard	nucleus	33.17	28.95
Bra023258.1-P	Field mustard	nucleus	35.18	28.75
Bra001071.1-P	Field mustard	nucleus	32.41	28.48
Bra017595.1-P	Field mustard	nucleus	24.12	28.24
Bra012571.1-P	Field mustard	nucleus	27.14	27.69
Bra020988.1-P	Field mustard	nucleus	24.12	27.51
Bra009515.1-P	Field mustard	nucleus	24.87	27.27
Bra008593.1-P	Field mustard	nucleus	32.91	27.12
Bra035507.1-P	Field mustard	nucleus	27.14	25.29
Zm00001d034433_P003	Maize	nucleus	39.45	25.28
Bra032752.1-P	Field mustard	nucleus	26.63	22.22
Bra013358.1-P	Field mustard	nucleus	25.63	19.73

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EnsemblPlantsGene:Bra023800	EnsemblPlants:Bra023800.1	EnsemblPlants:Bra023800.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
InterPro:IPR036388	UniProt:M4E4U6	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF139	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0002544169	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT3G22830 (E=1e-150) AT-HSFA6B, HSFA6B | AT-HSFA6B; DNA binding / transcription factor

Coordinates

chrA01:-:20018841..20020677

Molecular Weight (calculated)

45889.6 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.954

Length

398 amino acids

Sequence
(BLAST)

001: MDPSYRFIKE EFPRGFNDSP SPPSSYLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT KTYDLVEDSR TNHVVSWSQA NNSFIVWDPE SFSMTLLPIF
101: FKHNNFSSFV RQLNTYGFRK VNPDRWEFAN EGFLRGQKHL LKTIRRRKTS NNNQMQPPQS SSQLQSLDNC CIEVGKYGLD GEMDSLRRDK QVLMMELVKV
201: RQQQQSTKMD LTLLEDKLKK TESKQKQMMS FLARAMQNPD FLQQLIEQKE KRKNTEEAID KKRQRPIDQG KRHVVCVEDY DDGGGGYGRY GKDAGSSSAF
301: FDMKQETHGD MSELDRLAMH IQGLGDQCNK EDVVLDVGKG NEEEQHKERY QDENNEIYGE GFWEDLLNEG QNFDLQGDDE ENVDVLIEQL GYLGSSRH

Best Arabidopsis Sequence Match ( AT3G22830.1 )
(BLAST)

001: MDPSFRFIKE EFPAGFSDSP SPPSSSSYLY SSSMAEAAIN DPTTLSYPQP LEGLHESGPP PFLTKTYDLV EDSRTNHVVS WSKSNNSFIV WDPQAFSVTL
101: LPRFFKHNNF SSFVRQLNTY GFRKVNPDRW EFANEGFLRG QKHLLKNIRR RKTSNNSNQM QQPQSSEQQS LDNFCIEVGR YGLDGEMDSL RRDKQVLMME
201: LVRLRQQQQS TKMYLTLIEE KLKKTESKQK QMMSFLARAM QNPDFIQQLV EQKEKRKEIE EAISKKRQRP IDQGKRNVED YGDESGYGND VAASSSALIG
301: MSQEYTYGNM SEFEMSELDK LAMHIQGLGD NSSAREEVLN VEKGNDEEEV EDQQQGYHKE NNEIYGEGFW EDLLNEGQNF DFEGDQENVD VLIQQLGYLG
401: SSSHTN

Arabidopsis Description

HSFA6BHeat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.