Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G278100.1 | Wheat | nucleus | 96.48 | 96.48 |
| TraesCS4D01G276500.1 | Wheat | nucleus | 94.13 | 94.13 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 94.13 | 93.31 |
| Os03t0161900-02 | Rice | nucleus | 71.85 | 64.64 |
| EER95463 | Sorghum | nucleus | 67.16 | 58.57 |
| Zm00001d027757_P001 | Maize | nucleus | 65.4 | 58.07 |
| TraesCS1A01G375600.2 | Wheat | nucleus | 61.58 | 57.07 |
| Solyc06g053960.2.1 | Tomato | nucleus | 22.58 | 54.23 |
| CDX95313 | Canola | nucleus | 40.47 | 51.49 |
| AT3G51910.1 | Thale cress | nucleus | 41.06 | 51.47 |
| Bra012829.1-P | Field mustard | nucleus | 37.24 | 51.21 |
| CDX90626 | Canola | nucleus | 39.59 | 50.19 |
| Bra012828.1-P | Field mustard | nucleus | 39.59 | 50.19 |
| CDY29054 | Canola | nucleus | 38.71 | 49.81 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 44.28 | 49.03 |
| TraesCS5A01G437900.1 | Wheat | nucleus | 48.39 | 47.69 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 46.33 | 47.45 |
| KRH32059 | Soybean | nucleus | 47.21 | 47.21 |
| CDX90627 | Canola | nucleus | 39.59 | 47.04 |
| VIT_00s0179g00150.t01 | Wine grape | nucleus | 48.39 | 45.71 |
| KRG95588 | Soybean | nucleus | 48.68 | 44.86 |
| Bra007739.1-P | Field mustard | nucleus | 37.24 | 44.56 |
| CDY11470 | Canola | nucleus | 37.24 | 44.56 |
| KRH67266 | Soybean | nucleus | 50.44 | 44.56 |
| AT3G63350.1 | Thale cress | nucleus | 36.07 | 43.62 |
| CDX76693 | Canola | nucleus | 36.36 | 43.51 |
| CDX94887 | Canola | nucleus | 34.31 | 43.33 |
| PGSC0003DMT400049793 | Potato | nucleus | 45.75 | 42.86 |
| KRH31657 | Soybean | nucleus | 42.23 | 42.73 |
| PGSC0003DMT400049795 | Potato | nucleus | 44.57 | 42.22 |
| CDY34229 | Canola | nucleus | 46.63 | 41.95 |
| Solyc09g065660.2.1 | Tomato | nucleus | 45.75 | 41.94 |
| KRG91367 | Soybean | nucleus | 44.87 | 41.8 |
| CDY14893 | Canola | nucleus | 31.96 | 41.6 |
| AT5G43840.1 | Thale cress | nucleus | 34.02 | 41.13 |
| CDY46607 | Canola | nucleus | 44.57 | 40.97 |
| VIT_05s0020g04090.t01 | Wine grape | nucleus | 42.23 | 40.91 |
| Solyc09g082670.2.1 | Tomato | nucleus | 42.52 | 40.73 |
| KRH35452 | Soybean | nucleus | 43.7 | 40.71 |
| TraesCS2A01G089300.1 | Wheat | nucleus | 49.27 | 40.68 |
| Bra035993.1-P | Field mustard | nucleus | 33.43 | 40.57 |
| CDY46606 | Canola | nucleus | 45.45 | 40.47 |
| CDY10674 | Canola | nucleus | 46.04 | 40.36 |
| PGSC0003DMT400016511 | Potato | nucleus | 42.52 | 40.06 |
| Bra023800.1-P | Field mustard | nucleus | 46.63 | 39.95 |
| TraesCS5A01G383800.1 | Wheat | nucleus | 43.4 | 39.78 |
| CDY10311 | Canola | nucleus | 44.87 | 39.43 |
| TraesCS3A01G405200.1 | Wheat | nucleus | 45.45 | 39.04 |
| CDX94884 | Canola | nucleus | 32.84 | 39.02 |
| Bra033913.1-P | Field mustard | nucleus | 46.33 | 38.82 |
| PGSC0003DMT400041944 | Potato | nucleus | 39.0 | 38.66 |
| AT3G22830.1 | Thale cress | nucleus | 45.75 | 38.42 |
| Bra001885.1-P | Field mustard | nucleus | 43.11 | 37.6 |
| CDX92958 | Canola | nucleus | 36.36 | 36.05 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 24.63 | 35.59 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 26.98 | 33.7 |
| TraesCS7A01G360400.1 | Wheat | nucleus | 34.9 | 33.24 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 26.69 | 33.21 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 25.51 | 32.71 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 25.81 | 31.21 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 28.15 | 30.57 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 22.87 | 29.77 |
| TraesCS4A01G062800.1 | Wheat | nucleus | 33.43 | 29.77 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 26.69 | 28.0 |
| TraesCS4A01G322300.1 | Wheat | nucleus | 39.59 | 25.91 |
| TraesCS6A01G098800.1 | Wheat | nucleus | 33.43 | 24.89 |
| TraesCS2A01G204500.1 | Wheat | nucleus | 35.19 | 24.05 |
| TraesCS1A01G350400.2 | Wheat | nucleus | 31.09 | 23.93 |
| TraesCS3A01G289200.1 | Wheat | nucleus | 28.74 | 22.69 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF201 | SMART:SM00415 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS4A01G027700 |
| EnsemblPlants:TraesCS4A01G027700.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:19620363..19622625
Molecular Weight (calculated)
39601.1 Da
IEP (calculated)
4.794
GRAVY (calculated)
-0.690
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVLLPVRV KEEWPPPPPE EEEELEHRGL APRPMEGLHE TGPPPFLTKT FDLVADPATD GVVSWGRAGD SFVVWDPHLF AAVLLPRFFK HSNFSSFVRQ
101: LNTYGFRKID PDRWEFANEG FIRGQRQLLK MIKRRRPMSY LPSSQQQALG SCLEVGQFGF DEEIEVLKRD KNALLAEVVK LRQEQQSSRA DMRAMEERLH
201: HVEQKQLQMM GFLARAIQNP DFFLQLIQQQ NKLKDLEDGY PTKRRRPIDV MPFLGPEGTS QSEPLESTFI FEDREFSELE NLAMNIQGIR KGMEDDRGGR
301: NQGCGEAELT DDFWEELLSE GMRDEAEMLE LERRRSRCFD A
101: LNTYGFRKID PDRWEFANEG FIRGQRQLLK MIKRRRPMSY LPSSQQQALG SCLEVGQFGF DEEIEVLKRD KNALLAEVVK LRQEQQSSRA DMRAMEERLH
201: HVEQKQLQMM GFLARAIQNP DFFLQLIQQQ NKLKDLEDGY PTKRRRPIDV MPFLGPEGTS QSEPLESTFI FEDREFSELE NLAMNIQGIR KGMEDDRGGR
301: NQGCGEAELT DDFWEELLSE GMRDEAEMLE LERRRSRCFD A
001: MEELKVEMEE ETVTFTGSVA ASSSVGSSSS PRPMEGLNET GPPPFLTKTY EMVEDPATDT VVSWSNGRNS FVVWDSHKFS TTLLPRYFKH SNFSSFIRQL
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
101: NTYGFRKIDP DRWEFANEGF LAGQKHLLKN IKRRRNMGLQ NVNQQGSGMS CVEVGQYGFD GEVERLKRDH GVLVAEVVRL RQQQHSSKSQ VAAMEQRLLV
201: TEKRQQQMMT FLAKALNNPN FVQQFAVMSK EKKSLFGLDV GRKRRLTSTP SLGTMEENLL HDQEFDRMKD DMEMLFAAAI DDEANNSMPT KEEQCLEAMN
301: VMMRDGNLEA ALDVKVEDLV GSPLDWDSQD LHDMVDQMGF LGSEP
Arabidopsis Description
HSFA2Heat stress transcription factor A-2 [Source:UniProtKB/Swiss-Prot;Acc:O80982]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.